Gm56543 Gene Detail

Summary

• Symbol
  Gm56543
• Name
  predicted gene, 56543

• Feature Type
  lncRNA gene
• IDs
  MGI:7337000
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:4284389-4284787 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337000	lncRNA gene	Chr12:4284389-4284787 (+)
129S1/SvImJ	ENSMUSG00200023839	lncRNA gene	Chr12:1243867-1244265 (+)
A/J	ENSMUSG00195017420	lncRNA gene	Chr12:1271568-1271967 (+)
AKR/J	ENSMUSG00220033341	lncRNA gene	Chr12:1269128-1269526 (+)
BALB/cJ	ENSMUSG00180015749	lncRNA gene	Chr12:1268036-1268435 (+)
C3H/HeJ	ENSMUSG00175009829	lncRNA gene	Chr12:1251959-1252356 (+)
C57BL/6NJ	ENSMUSG00215022305	lncRNA gene	Chr12:1198681-1199078 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023753	lncRNA gene	Chr12:1075378-1075770 (+)
CBA/J	ENSMUSG00210013668	lncRNA gene	Chr12:1271696-1272093 (+)
DBA/2J	ENSMUSG00185022162	lncRNA gene	Chr12:1250845-1251243 (+)
FVB/NJ	ENSMUSG00205003726	lncRNA gene	Chr12:1048523-1048921 (+)
JF1/MsJ	ENSUMUG00000036824	lncRNA gene	Chr12:1237649-1238032 (+)
LP/J	ENSMUSG00230011779	lncRNA gene	Chr12:3078950-3079348 (+)
NOD/ShiLtJ	ENSMUSG00190008264	lncRNA gene	Chr12:2490633-2491031 (+)
NZO/HlLtJ	ENSMUSG00225019767	lncRNA gene	Chr12:5136687-5137086 (+)
PWK/PhJ	ENSLUMG00010016998	lncRNA gene	Chr12:1059938-1060324 (+)
SPRET/EiJ	ENSMSPG00010005340	lncRNA gene	Chr12:1456981-1457362 (+)
WSB/EiJ	ENSIUOG00005002323	lncRNA gene	Chr12:1253043-1253446 (+)

Homology

• Gene Tree
  Gm56543
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120893 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120893	Ensembl Gene Model | MGI Sequence Detail	399	C57BL/6J
transcript	ENSMUST00000246328	Ensembl | MGI Sequence Detail	399	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56543:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112555	Chr12:4284438-4284452 (+)	56 bp