Gm56542 Gene Detail

Summary

• Symbol
  Gm56542
• Name
  predicted gene, 56542

• Feature Type
  lncRNA gene
• IDs
  MGI:7336998
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:104044180-104053179 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  399 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336998	lncRNA gene	Chr12:104044180-104053179 (+)
129S1/SvImJ	ENSMUSG00200028322	lncRNA gene	Chr12:95775850-95777074 (+)
A/J	ENSMUSG00195022678	lncRNA gene	Chr12:98371257-98372481 (+)
AKR/J	ENSMUSG00220045019	lncRNA gene	Chr12:96156667-96157888 (+)
BALB/cJ	ENSMUSG00180039845	lncRNA gene	Chr12:97490360-97491581 (+)
C3H/HeJ	ENSMUSG00175034765	lncRNA gene	Chr12:100183958-100185182 (+)
C57BL/6NJ	ENSMUSG00215042246	lncRNA gene	Chr12:96845892-96847116 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021553	lncRNA gene	Chr12:96280908-96282131 (+)
CBA/J	ENSMUSG00210014878	lncRNA gene	Chr12:97182318-97183539 (+)
DBA/2J	ENSMUSG00185047243	lncRNA gene	Chr12:98948398-98949619 (+)
FVB/NJ	ENSMUSG00205022676	lncRNA gene	Chr12:96167725-96168946 (+)
JF1/MsJ	ENSUMUG00000025847	lncRNA gene	Chr12:103739139-103740363 (+)
LP/J	ENSMUSG00230032956	lncRNA gene	Chr12:106040822-106042046 (+)
NOD/ShiLtJ	ENSMUSG00190034898	lncRNA gene	Chr12:89029339-89030560 (-)
NZO/HlLtJ	ENSMUSG00225038847	lncRNA gene	Chr12:107810535-107811759 (+)
PWK/PhJ	ENSLUMG00010014454	lncRNA gene	Chr12:97183816-97185040 (+)
SPRET/EiJ	ENSMSPG00010019918	lncRNA gene	Chr12:99567223-99568442 (+)
WSB/EiJ	ENSIUOG00005010475	lncRNA gene	Chr12:96180641-96181862 (+)

Homology

• Gene Tree
  Gm56542
  

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000120841 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120841	Ensembl Gene Model | MGI Sequence Detail	9000	C57BL/6J
transcript	ENSMUST00000311843	Ensembl | MGI Sequence Detail	3733	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114823	Chr12:104044195-104044211 (+)	23 bp