Gm56541 Gene Detail

Summary

• Symbol
  Gm56541
• Name
  predicted gene, 56541

• Feature Type
  lncRNA gene
• IDs
  MGI:7336996
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr12:85530789-85532867 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336996	lncRNA gene	Chr12:85530789-85532867 (-)
129S1/SvImJ	ENSMUSG00200050819	lncRNA gene	Chr12:77547294-77548006 (-)
A/J	ENSMUSG00195034631	lncRNA gene	Chr12:80166919-80167631 (-)
AKR/J	ENSMUSG00220049411	lncRNA gene	Chr12:77962851-77963563 (-)
BALB/cJ	ENSMUSG00180024619	lncRNA gene	Chr12:79204650-79205362 (-)
C3H/HeJ	ENSMUSG00175041607	lncRNA gene	Chr12:82297740-82298452 (-)
C57BL/6NJ	ENSMUSG00215047136	lncRNA gene	Chr12:78511118-78511830 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032615	lncRNA gene	Chr12:78472749-78473461 (-)
CBA/J	ENSMUSG00210046715	lncRNA gene	Chr12:78710933-78711645 (-)
DBA/2J	ENSMUSG00185002884	lncRNA gene	Chr12:80568192-80568904 (-)
FVB/NJ	ENSMUSG00205040283	lncRNA gene	Chr12:78379711-78380423 (-)
JF1/MsJ	ENSUMUG00000047898	lncRNA gene	Chr12:84553823-84554535 (-)
LP/J	ENSMUSG00230046780	lncRNA gene	Chr12:87630402-87631114 (-)
NOD/ShiLtJ	ENSMUSG00190048409	lncRNA gene	Chr12:77767950-77768662 (-)
NZO/HlLtJ	ENSMUSG00225053234	lncRNA gene	Chr12:89667504-89668216 (-)
PWK/PhJ	ENSLUMG00010028610	lncRNA gene	Chr12:78570435-78571147 (-)
SPRET/EiJ	ENSMSPG00010022079	lncRNA gene	Chr12:80388853-80389563 (-)
WSB/EiJ	ENSIUOG00005045590	lncRNA gene	Chr12:78419430-78420142 (-)

Homology

• Gene Tree
  Gm56541
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120835 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120835	Ensembl Gene Model | MGI Sequence Detail	2079	C57BL/6J
transcript	ENSMUST00000246030	Ensembl | MGI Sequence Detail	904	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3900	Chr12:85534615-85534627 (-)	-1,754 bp
Tssr117094	Chr12:85532754-85532768 (-)	106 bp
Tssr117093	Chr12:85532729-85532740 (-)	132 bp
Tssr117092	Chr12:85532702-85532713 (-)	159 bp
Tssr117091	Chr12:85532565-85532581 (-)	294 bp