Gm56540 Gene Detail

Summary

• Symbol
  Gm56540
• Name
  predicted gene, 56540

• Feature Type
  lncRNA gene
• IDs
  MGI:7336994
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:76417742-76418232 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336994	lncRNA gene	Chr12:76417742-76418232 (-)
129S1/SvImJ	ENSMUSG00200032704	lncRNA gene	Chr12:68363446-68363931 (-)
A/J	ENSMUSG00195033907	lncRNA gene	Chr12:71075324-71075809 (-)
AKR/J	ENSMUSG00220015319	lncRNA gene	Chr12:68834128-68834613 (-)
BALB/cJ	ENSMUSG00180034267	lncRNA gene	Chr12:70036292-70036777 (-)
C3H/HeJ	ENSMUSG00175044918	lncRNA gene	Chr12:73203091-73203576 (-)
C57BL/6NJ	ENSMUSG00215032424	lncRNA gene	Chr12:69414430-69414915 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036172	lncRNA gene	Chr12:69389844-69390329 (-)
CBA/J	ENSMUSG00210030812	lncRNA gene	Chr12:69622466-69622951 (-)
DBA/2J	ENSMUSG00185045036	lncRNA gene	Chr12:71487134-71487619 (-)
FVB/NJ	ENSMUSG00205034082	lncRNA gene	Chr12:69251545-69252030 (-)
JF1/MsJ	ENSUMUG00000026048	lncRNA gene	Chr12:75525117-75525599 (-)
LP/J	ENSMUSG00230021837	lncRNA gene	Chr12:78487167-78487652 (-)
NOD/ShiLtJ	ENSMUSG00190012953	lncRNA gene	Chr12:68673898-68674383 (-)
NZO/HlLtJ	ENSMUSG00225038656	lncRNA gene	Chr12:80549051-80549536 (-)
PWK/PhJ	ENSLUMG00010033638	lncRNA gene	Chr12:69552860-69553344 (-)
SPRET/EiJ	ENSMSPG00010019933	lncRNA gene	Chr12:71323610-71324085 (-)
WSB/EiJ	ENSIUOG00005013038	lncRNA gene	Chr12:69315115-69315600 (-)

Homology

• Gene Tree
  Gm56540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120833 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120833	Ensembl Gene Model | MGI Sequence Detail	491	C57BL/6J
transcript	ENSMUST00000246020	Ensembl | MGI Sequence Detail	491	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56540:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116729	Chr12:76418198-76418215 (-)	25 bp