Gm56539 Gene Detail

Summary

• Symbol
  Gm56539
• Name
  predicted gene, 56539

• Feature Type
  lncRNA gene
• IDs
  MGI:7336992
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:73914453-73914865 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336992	lncRNA gene	Chr12:73914453-73914865 (+)
129S1/SvImJ	ENSMUSG00200033121	lncRNA gene	Chr12:65843170-65843593 (+)
A/J	ENSMUSG00195014841	lncRNA gene	Chr12:68536579-68537002 (+)
AKR/J	ENSMUSG00220015621	lncRNA gene	Chr12:66336297-66336709 (+)
BALB/cJ	ENSMUSG00180036423	lncRNA gene	Chr12:67531557-67531969 (+)
C3H/HeJ	ENSMUSG00175029856	lncRNA gene	Chr12:70662325-70662748 (+)
C57BL/6NJ	ENSMUSG00215031727	lncRNA gene	Chr12:66907379-66907791 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037087	lncRNA gene	Chr12:66850543-66850955 (+)
CBA/J	ENSMUSG00210030938	lncRNA gene	Chr12:67099356-67099779 (+)
DBA/2J	ENSMUSG00185004991	lncRNA gene	Chr12:68996768-68997180 (+)
FVB/NJ	ENSMUSG00205035675	lncRNA gene	Chr12:66717815-66718227 (+)
JF1/MsJ	ENSUMUG00000024894	lncRNA gene	Chr12:72970448-72970878 (+)
LP/J	ENSMUSG00230022524	lncRNA gene	Chr12:75961091-75961514 (+)
NOD/ShiLtJ	ENSMUSG00190013155	lncRNA gene	Chr12:66148060-66148472 (+)
NZO/HlLtJ	ENSMUSG00225039080	lncRNA gene	Chr12:78015614-78016037 (+)
PWK/PhJ	ENSLUMG00010032133	lncRNA gene	Chr12:67026121-67026551 (+)
SPRET/EiJ	ENSMSPG00010029978	lncRNA gene	Chr12:68731356-68731791 (+)
WSB/EiJ	ENSIUOG00005013006	lncRNA gene	Chr12:66794536-66794948 (+)

Homology

• Gene Tree
  Gm56539
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120821 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120821	Ensembl Gene Model | MGI Sequence Detail	413	C57BL/6J
transcript	ENSMUST00000245975	Ensembl | MGI Sequence Detail	413	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56539:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113831	Chr12:73914458-73914462 (+)	7 bp