Gm56538 Gene Detail

Summary

• Symbol
  Gm56538
• Name
  predicted gene, 56538

• Feature Type
  lncRNA gene
• IDs
  MGI:7336990
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:113118921-113119764 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336990	lncRNA gene	Chr12:113118921-113119764 (+)
129S1/SvImJ	ENSMUSG00200028055	lncRNA gene	Chr12:104903387-104904053 (+)
A/J	ENSMUSG00195050936	lncRNA gene	Chr12:107407124-107407790 (+)
AKR/J	ENSMUSG00220037892	lncRNA gene	Chr12:105336921-105337574 (+)
BALB/cJ	ENSMUSG00180052168	lncRNA gene	Chr12:106672069-106672735 (+)
C3H/HeJ	ENSMUSG00175045651	lncRNA gene	Chr12:109258391-109259057 (+)
C57BL/6NJ	ENSMUSG00215048671	lncRNA gene	Chr12:105939586-105940239 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042715	lncRNA gene	Chr12:105414243-105414906 (+)
CBA/J	ENSMUSG00210042655	lncRNA gene	Chr12:106314929-106315595 (+)
DBA/2J	ENSMUSG00185033773	lncRNA gene	Chr12:108123490-108124154 (+)
FVB/NJ	ENSMUSG00205039795	lncRNA gene	Chr12:105338996-105339660 (+)
JF1/MsJ	ENSUMUG00000032922	lncRNA gene	Chr12:112897294-112897967 (+)
LP/J	ENSMUSG00230045450	lncRNA gene	Chr12:115167724-115168377 (+)
NOD/ShiLtJ	ENSMUSG00190049015	lncRNA gene	Chr12:79880517-79881170 (-)
NZO/HlLtJ	ENSMUSG00225043893	lncRNA gene	Chr12:116914897-116915563 (+)
PWK/PhJ	ENSLUMG00010050093	lncRNA gene	Chr12:106342592-106343216 (+)
SPRET/EiJ	ENSMSPG00010021444	lncRNA gene	Chr12:108626231-108626885 (+)
WSB/EiJ	ENSIUOG00005042291	lncRNA gene	Chr12:105323779-105324445 (+)

Homology

• Gene Tree
  Gm56538
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120778 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120778	Ensembl Gene Model | MGI Sequence Detail	844	C57BL/6J
transcript	ENSMUST00000245773	Ensembl | MGI Sequence Detail	844	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56538:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115492	Chr12:113118982-113119004 (+)	72 bp