Gm56536 Gene Detail

Summary

• Symbol
  Gm56536
• Name
  predicted gene, 56536

• Feature Type
  lncRNA gene
• IDs
  MGI:7336986
• Alliance
  genome feature page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr12:113389573-113390987 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336986	lncRNA gene	Chr12:113389573-113390987 (-)
129S1/SvImJ	ENSMUSG00200027384	lncRNA gene	Chr12:105177910-105178543 (-)
A/J	ENSMUSG00195048590	lncRNA gene	Chr12:107675557-107676186 (-)
AKR/J	ENSMUSG00220036610	lncRNA gene	Chr12:105604574-105605207 (-)
BALB/cJ	ENSMUSG00180049807	lncRNA gene	Chr12:106946501-106947134 (-)
C3H/HeJ	ENSMUSG00175041322	lncRNA gene	Chr12:109526856-109527489 (-)
C57BL/6NJ	ENSMUSG00215048170	lncRNA gene	Chr12:106214057-106214690 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041353	lncRNA gene	Chr12:105847499-105848132 (-)
CBA/J	ENSMUSG00210035097	lncRNA gene	Chr12:106583306-106583939 (-)
DBA/2J	ENSMUSG00185034636	lncRNA gene	Chr12:108401726-108402359 (-)
FVB/NJ	ENSMUSG00205040402	lncRNA gene	Chr12:105614988-105615621 (-)
JF1/MsJ	ENSUMUG00000022797	lncRNA gene	Chr12:113188073-113188706 (-)
LP/J	ENSMUSG00230045244	lncRNA gene	Chr12:115442078-115442711 (-)
NOD/ShiLtJ	ENSMUSG00190036954	lncRNA gene	Chr12:105025141-105025774 (-)
NZO/HlLtJ	ENSMUSG00225044353	lncRNA gene	Chr12:117183077-117183710 (-)
PWK/PhJ	ENSLUMG00010049674	lncRNA gene	Chr12:106647701-106648334 (-)
SPRET/EiJ	ENSMSPG00010021761	lncRNA gene	Chr12:108895372-108896001 (-)
WSB/EiJ	ENSIUOG00005037210	lncRNA gene	Chr12:105903174-105903807 (-)

Homology

• Gene Tree
  Gm56536
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120754 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120754	Ensembl Gene Model | MGI Sequence Detail	1415	C57BL/6J
transcript	ENSMUST00000245607	Ensembl | MGI Sequence Detail	1415	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56536:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3973	Chr12:113391143-113391151 (-)	-160 bp
Tssr3972	Chr12:113391130-113391133 (-)	-145 bp
Tssr3971	Chr12:113391086-113391093 (-)	-103 bp
Tssr118004	Chr12:113391027-113391042 (-)	-48 bp
Tssr118003	Chr12:113390952-113391016 (-)	3 bp
Tssr118002	Chr12:113390937-113390950 (-)	43 bp
Tssr118001	Chr12:113390905-113390914 (-)	77 bp
Tssr118000	Chr12:113390580-113390591 (-)	401 bp
Tssr117999	Chr12:113390536-113390567 (-)	435 bp
Tssr117998	Chr12:113390510-113390526 (-)	469 bp
Tssr117997	Chr12:113390443-113390502 (-)	514 bp
Tssr117996	Chr12:113390403-113390414 (-)	578 bp
Tssr117995	Chr12:113390387-113390400 (-)	593 bp
Tssr117994	Chr12:113390311-113390321 (-)	671 bp