Gm56535 Gene Detail

Summary

• Symbol
  Gm56535
• Name
  predicted gene, 56535

• Feature Type
  lncRNA gene
• IDs
  MGI:7336984
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:75716427-75757449 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336984	lncRNA gene	Chr12:75716427-75757449 (+)
129S1/SvImJ	ENSMUSG00200033326	lncRNA gene	Chr12:67662102-67663872 (+)
A/J	ENSMUSG00195015297	lncRNA gene	Chr12:70373929-70375699 (+)
AKR/J	ENSMUSG00220015434	lncRNA gene	Chr12:68140124-68141894 (+)
BALB/cJ	ENSMUSG00180035675	lncRNA gene	Chr12:69334942-69336712 (+)
C3H/HeJ	ENSMUSG00175045409	lncRNA gene	Chr12:72493671-72495441 (+)
C57BL/6NJ	ENSMUSG00215035376	lncRNA gene	Chr12:68713048-68714818 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036139	lncRNA gene	Chr12:68692161-68693931 (+)
CBA/J	ENSMUSG00210031803	lncRNA gene	Chr12:68921162-68922932 (+)
DBA/2J	ENSMUSG00185043633	lncRNA gene	Chr12:70793246-70795016 (+)
FVB/NJ	ENSMUSG00205037198	lncRNA gene	Chr12:68538053-68539823 (+)
JF1/MsJ	ENSUMUG00000023525	lncRNA gene	Chr12:74822376-74824146 (+)
LP/J	ENSMUSG00230021885	lncRNA gene	Chr12:77785905-77787675 (+)
NOD/ShiLtJ	ENSMUSG00190013295	lncRNA gene	Chr12:67972481-67974251 (+)
NZO/HlLtJ	ENSMUSG00225038679	lncRNA gene	Chr12:79846977-79848747 (+)
PWK/PhJ	ENSLUMG00010033468	lncRNA gene	Chr12:68854580-68856360 (+)
SPRET/EiJ	ENSMSPG00010029843	lncRNA gene	Chr12:70614007-70615785 (+)
WSB/EiJ	ENSIUOG00005012506	lncRNA gene	Chr12:68607430-68609200 (+)

Homology

• Gene Tree
  Gm56535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  20
• Gene trapped
  20
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120709 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120709	Ensembl Gene Model | MGI Sequence Detail	41023	C57BL/6J
transcript	ENSMUST00000309266	Ensembl | MGI Sequence Detail	1888	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113911	Chr12:75716587-75716604 (+)	169 bp
Tssr113912	Chr12:75716609-75716652 (+)	204 bp