Gm56533 Gene Detail

Summary

• Symbol
  Gm56533
• Name
  predicted gene, 56533

• Feature Type
  lncRNA gene
• IDs
  MGI:7336980
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:86826688-86897756 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2022 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336980	lncRNA gene	Chr12:86826688-86897756 (-)
129S1/SvImJ	ENSMUSG00200051532	lncRNA gene	Chr12:78885989-78887287 (-)
A/J	ENSMUSG00195035109	lncRNA gene	Chr12:81505671-81506971 (-)
AKR/J	ENSMUSG00220049219	lncRNA gene	Chr12:79301579-79302877 (-)
BALB/cJ	ENSMUSG00180027089	lncRNA gene	Chr12:80543426-80544726 (-)
C3H/HeJ	ENSMUSG00175040953	lncRNA gene	Chr12:83636382-83637680 (-)
C57BL/6NJ	ENSMUSG00215047229	lncRNA gene	Chr12:79849842-79851140 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033784	lncRNA gene	Chr12:79821361-79822648 (-)
CBA/J	ENSMUSG00210046625	lncRNA gene	Chr12:80054851-80056149 (-)
DBA/2J	ENSMUSG00185002710	lncRNA gene	Chr12:81906733-81908027 (-)
FVB/NJ	ENSMUSG00205041564	lncRNA gene	Chr12:79721535-79722835 (-)
JF1/MsJ	ENSUMUG00000052388	lncRNA gene	Chr12:85916002-85917302 (-)
LP/J	ENSMUSG00230045722	lncRNA gene	Chr12:88968910-88970208 (-)
NOD/ShiLtJ	ENSMUSG00190047709	lncRNA gene	Chr12:79114250-79115550 (-)
NZO/HlLtJ	ENSMUSG00225052647	lncRNA gene	Chr12:91005931-91007229 (-)
PWK/PhJ	ENSLUMG00010031757	lncRNA gene	Chr12:79926501-79927795 (-)
SPRET/EiJ	ENSMSPG00010001128	lncRNA gene	Chr12:81738183-81739457 (-)
WSB/EiJ	ENSIUOG00005044658	lncRNA gene	Chr12:79774377-79775669 (-)

Homology

• Gene Tree
  Gm56533
  

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000120715 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120715	Ensembl Gene Model | MGI Sequence Detail	71069	C57BL/6J
transcript	ENSMUST00000245390	Ensembl | MGI Sequence Detail	2104	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56533:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117128	Chr12:86871688-86871730 (-)	26,047 bp