Gm56532 Gene Detail

Summary

• Symbol
  Gm56532
• Name
  predicted gene, 56532

• Feature Type
  lncRNA gene
• IDs
  MGI:7336978
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:8549779-8556818 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  317 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336978	lncRNA gene	Chr12:8549779-8556818 (+)
129S1/SvImJ	ENSMUSG00200024262	lncRNA gene	Chr12:5521243-5522102 (+)
A/J	ENSMUSG00195017432	lncRNA gene	Chr12:5560683-5561542 (+)
AKR/J	ENSMUSG00220031794	lncRNA gene	Chr12:5594522-5595381 (+)
BALB/cJ	ENSMUSG00180015116	lncRNA gene	Chr12:5553213-5554072 (+)
C3H/HeJ	ENSMUSG00175009558	lncRNA gene	Chr12:5551411-5552270 (+)
C57BL/6NJ	ENSMUSG00215025756	lncRNA gene	Chr12:5478916-5479775 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022885	lncRNA gene	Chr12:5336445-5337305 (+)
CBA/J	ENSMUSG00210013594	lncRNA gene	Chr12:5582193-5583052 (+)
DBA/2J	ENSMUSG00185021624	lncRNA gene	Chr12:5524987-5525846 (+)
FVB/NJ	ENSMUSG00205003609	lncRNA gene	Chr12:5327669-5328528 (+)
JF1/MsJ	ENSUMUG00000035829	lncRNA gene	Chr12:5495726-5496584 (+)
LP/J	ENSMUSG00230012373	lncRNA gene	Chr12:7354941-7355800 (+)
NOD/ShiLtJ	ENSMUSG00190007991	lncRNA gene	Chr12:6769180-6770039 (+)
NZO/HlLtJ	ENSMUSG00225019450	lncRNA gene	Chr12:9433966-9434825 (+)
PWK/PhJ	ENSLUMG00010016960	lncRNA gene	Chr12:5306628-5307486 (+)
SPRET/EiJ	ENSMSPG00010005232	lncRNA gene	Chr12:5858377-5859241 (+)
WSB/EiJ	ENSIUOG00005002465	lncRNA gene	Chr12:5559003-5559862 (+)

Homology

• Gene Tree
  Gm56532
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120673 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120673	Ensembl Gene Model | MGI Sequence Detail	7040	C57BL/6J
transcript	ENSMUST00000245059	Ensembl | MGI Sequence Detail	1405	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56532:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3788	Chr12:8550184-8550216 (+)	421 bp
Tssr112723	Chr12:8550253-8550278 (+)	487 bp
Tssr3789	Chr12:8550325-8550332 (+)	550 bp