Gm56531 Gene Detail

Summary

• Symbol
  Gm56531
• Name
  predicted gene, 56531

• Feature Type
  lncRNA gene
• IDs
  MGI:7336976
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:8649708-8691060 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  757 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336976	lncRNA gene	Chr12:8649708-8691060 (-)
129S1/SvImJ	ENSMUSG00200024273	lncRNA gene	Chr12:5620762-5662095 (-)
A/J	ENSMUSG00195017444	lncRNA gene	Chr12:5662998-5711055 (-)
AKR/J	ENSMUSG00220031835	lncRNA gene	Chr12:5694065-5739474 (-)
BALB/cJ	ENSMUSG00180015123	lncRNA gene	Chr12:5655525-5703580 (-)
C3H/HeJ	ENSMUSG00175009564	lncRNA gene	Chr12:5650938-5692267 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210013600	lncRNA gene	Chr12:5681708-5723040 (-)
DBA/2J	ENSMUSG00185021633	lncRNA gene	Chr12:5624521-5665849 (-)
FVB/NJ	ENSMUSG00205003631	lncRNA gene	Chr12:5422242-5422434 (-)
JF1/MsJ	ENSUMUG00000035852	lncRNA gene	Chr12:5592614-5626866 (-)
LP/J	ENSMUSG00230012163	lncRNA gene	Chr12:7454448-7495780 (-)
NOD/ShiLtJ	ENSMUSG00190007999	lncRNA gene	Chr12:6868697-6910026 (-)
NZO/HlLtJ	ENSMUSG00225019335	lncRNA gene	Chr12:9533693-9575020 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010005236	lncRNA gene	Chr12:5943766-5971818 (-)
WSB/EiJ	ENSIUOG00005002471	lncRNA gene	Chr12:5658803-5700125 (-)

Homology

• Gene Tree
  Gm56531
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000120669 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120669	Ensembl Gene Model | MGI Sequence Detail	41353	C57BL/6J
transcript	ENSMUST00000245039	Ensembl | MGI Sequence Detail	749	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56531:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115719	Chr12:8691008-8691039 (-)	36 bp
Tssr115718	Chr12:8690670-8690682 (-)	384 bp
Tssr115717	Chr12:8687026-8687039 (-)	4,027 bp