Gm56530 Gene Detail

Summary

• Symbol
  Gm56530
• Name
  predicted gene, 56530

• Feature Type
  lncRNA gene
• IDs
  MGI:7336974
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:80160242-80164302 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336974	lncRNA gene	Chr12:80160242-80164302 (-)
129S1/SvImJ	ENSMUSG00200051002	lncRNA gene	Chr12:72130355-72132336 (-)
A/J	ENSMUSG00195035808	lncRNA gene	Chr12:74824012-74825993 (-)
AKR/J	ENSMUSG00220050442	lncRNA gene	Chr12:72613421-72615402 (-)
BALB/cJ	ENSMUSG00180026627	lncRNA gene	Chr12:73794671-73796652 (-)
C3H/HeJ	ENSMUSG00175044484	lncRNA gene	Chr12:76956260-76958241 (-)
C57BL/6NJ	ENSMUSG00215047668	lncRNA gene	Chr12:73160268-73162250 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031556	lncRNA gene	Chr12:73086084-73088062 (-)
CBA/J	ENSMUSG00210047119	lncRNA gene	Chr12:73370506-73372487 (-)
DBA/2J	ENSMUSG00185044161	lncRNA gene	Chr12:75231254-75233236 (-)
FVB/NJ	ENSMUSG00205039865	lncRNA gene	Chr12:72976161-72978149 (-)
JF1/MsJ	ENSUMUG00000022084	lncRNA gene	Chr12:79215937-79217924 (-)
LP/J	ENSMUSG00230046402	lncRNA gene	Chr12:82248482-82250463 (-)
NOD/ShiLtJ	ENSMUSG00190048678	lncRNA gene	Chr12:72432692-72434677 (-)
NZO/HlLtJ	ENSMUSG00225052155	lncRNA gene	Chr12:84300885-84302866 (-)
PWK/PhJ	ENSLUMG00010031491	lncRNA gene	Chr12:73235181-73237168 (-)
SPRET/EiJ	ENSMSPG00010021226	lncRNA gene	Chr12:75052730-75054701 (-)
WSB/EiJ	ENSIUOG00005044367	lncRNA gene	Chr12:73043286-73045266 (-)

Homology

• Gene Tree
  Gm56530
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120387 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120387	Ensembl Gene Model | MGI Sequence Detail	4061	C57BL/6J
transcript	ENSMUST00000252902	Ensembl | MGI Sequence Detail	3905	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56530:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116863	Chr12:80163693-80163715 (-)	598 bp