Gm56529 Gene Detail

Summary

• Symbol
  Gm56529
• Name
  predicted gene, 56529

• Feature Type
  lncRNA gene
• IDs
  MGI:7336972
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:111415933-111502002 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2384 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336972	lncRNA gene	Chr12:111415933-111502002 (-)
129S1/SvImJ	ENSMUSG00200028403	lncRNA gene	Chr12:103247657-103249776 (-)
A/J	ENSMUSG00195050733	lncRNA gene	Chr12:105767659-105769760 (-)
AKR/J	ENSMUSG00220042910	lncRNA gene	Chr12:103662764-103664857 (-)
BALB/cJ	ENSMUSG00180050185	lncRNA gene	Chr12:105010728-105012849 (-)
C3H/HeJ	ENSMUSG00175041994	lncRNA gene	Chr12:107579169-107581262 (-)
C57BL/6NJ	ENSMUSG00215050990	lncRNA gene	Chr12:104283649-104285770 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041296	lncRNA gene	Chr12:103763848-103765941 (-)
CBA/J	ENSMUSG00210039485	lncRNA gene	Chr12:104640593-104642686 (-)
DBA/2J	ENSMUSG00185031949	lncRNA gene	Chr12:106470514-106472607 (-)
FVB/NJ	ENSMUSG00205038899	lncRNA gene	Chr12:103698150-103700243 (-)
JF1/MsJ	ENSUMUG00000029554	lncRNA gene	Chr12:111234896-111237017 (-)
LP/J	ENSMUSG00230044796	lncRNA gene	Chr12:113512236-113514357 (-)
NOD/ShiLtJ	ENSMUSG00190036430	lncRNA gene	Chr12:81535386-81537479 (+)
NZO/HlLtJ	ENSMUSG00225043172	lncRNA gene	Chr12:115260393-115262486 (-)
PWK/PhJ	ENSLUMG00010051488	lncRNA gene	Chr12:104692496-104694629 (-)
SPRET/EiJ	ENSMSPG00010023169	lncRNA gene	Chr12:106974774-106976905 (-)
WSB/EiJ	ENSIUOG00005039068	lncRNA gene	Chr12:103676213-103678306 (-)

Homology

• Gene Tree
  Gm56529
  

Sequences &
Gene Models

• All Sequences
  71

• Ensembl
  ENSMUSG00000120091 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120091	Ensembl Gene Model | MGI Sequence Detail	86070	C57BL/6J
transcript	ENSMUST00000375635	Ensembl | MGI Sequence Detail	3139	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56529:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117827	Chr12:111482165-111482167 (-)	19,836 bp
Tssr117826	Chr12:111471486-111471503 (-)	30,507 bp
Tssr117819	Chr12:111421442-111421451 (-)	80,555 bp
Tssr117818	Chr12:111420575-111420594 (-)	81,417 bp