Gm56526 Gene Detail

Summary

• Symbol
  Gm56526
• Name
  predicted gene, 56526

• Feature Type
  lncRNA gene
• IDs
  MGI:7336966
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:70181862-70183073 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336966	lncRNA gene	Chr12:70181862-70183073 (-)
129S1/SvImJ	ENSMUSG00200032764	lncRNA gene	Chr12:62102296-62102910 (-)
A/J	ENSMUSG00195015352	lncRNA gene	Chr12:64799667-64800281 (-)
AKR/J	ENSMUSG00220015480	lncRNA gene	Chr12:62600254-62600868 (-)
BALB/cJ	ENSMUSG00180036645	lncRNA gene	Chr12:63798741-63799355 (-)
C3H/HeJ	ENSMUSG00175030961	lncRNA gene	Chr12:66893139-66893753 (-)
C57BL/6NJ	ENSMUSG00215031025	lncRNA gene	Chr12:63171581-63172195 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036749	lncRNA gene	Chr12:63132880-63133494 (-)
CBA/J	ENSMUSG00210031831	lncRNA gene	Chr12:63363135-63363749 (-)
DBA/2J	ENSMUSG00185004828	lncRNA gene	Chr12:65262521-65263135 (-)
FVB/NJ	ENSMUSG00205032122	lncRNA gene	Chr12:63004636-63005250 (-)
JF1/MsJ	ENSUMUG00000028593	lncRNA gene	Chr12:69216439-69217052 (-)
LP/J	ENSMUSG00230022665	lncRNA gene	Chr12:72227886-72228500 (-)
NOD/ShiLtJ	ENSMUSG00190012999	lncRNA gene	Chr12:62416640-62417254 (-)
NZO/HlLtJ	ENSMUSG00225038323	lncRNA gene	Chr12:74304312-74304926 (-)
PWK/PhJ	ENSLUMG00010033951	lncRNA gene	Chr12:63292307-63292920 (-)
SPRET/EiJ	ENSMSPG00010031630	lncRNA gene	Chr12:64979061-64979675 (-)
WSB/EiJ	ENSIUOG00005012878	lncRNA gene	Chr12:63055155-63055769 (-)

Homology

• Gene Tree
  Gm56526
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120581 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120581	Ensembl Gene Model | MGI Sequence Detail	1212	C57BL/6J
transcript	ENSMUST00000244306	Ensembl | MGI Sequence Detail	1212	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56526:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116556	Chr12:70183035-70183050 (-)	30 bp