Gm56525 Gene Detail

Summary

• Symbol
  Gm56525
• Name
  predicted gene, 56525

• Feature Type
  lncRNA gene
• IDs
  MGI:7336964
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:109888309-109919725 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  849 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336964	lncRNA gene	Chr12:109888309-109919725 (+)
129S1/SvImJ	ENSMUSG00200029490	lncRNA gene	Chr12:101689528-101691131 (+)
A/J	ENSMUSG00195045136	lncRNA gene	Chr12:104211072-104212677 (+)
AKR/J	ENSMUSG00220042804	lncRNA gene	Chr12:102103548-102105151 (+)
BALB/cJ	ENSMUSG00180049502	lncRNA gene	Chr12:103452532-103454135 (+)
C3H/HeJ	ENSMUSG00175042557	lncRNA gene	Chr12:106022391-106023996 (+)
C57BL/6NJ	ENSMUSG00215047820	lncRNA gene	Chr12:102725456-102727059 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021907	lncRNA gene	Chr12:102195784-102197389 (+)
CBA/J	ENSMUSG00210031430	lncRNA gene	Chr12:103083836-103085441 (+)
DBA/2J	ENSMUSG00185032782	lncRNA gene	Chr12:104911579-104913184 (+)
FVB/NJ	ENSMUSG00205047076	lncRNA gene	Chr12:102137382-102138985 (+)
JF1/MsJ	ENSUMUG00000029279	lncRNA gene	Chr12:109659669-109661274 (+)
LP/J	ENSMUSG00230030871	lncRNA gene	Chr12:111954224-111955827 (+)
NOD/ShiLtJ	ENSMUSG00190031301	lncRNA gene	Chr12:83093272-83094877 (-)
NZO/HlLtJ	ENSMUSG00225038460	lncRNA gene	Chr12:113703830-113705435 (+)
PWK/PhJ	ENSLUMG00010049767	lncRNA gene	Chr12:103124965-103126570 (+)
SPRET/EiJ	ENSMSPG00010024104	lncRNA gene	Chr12:105424209-105425811 (+)
WSB/EiJ	ENSIUOG00005010244	lncRNA gene	Chr12:102125676-102127281 (+)

Homology

• Gene Tree
  Gm56525
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120578 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120578	Ensembl Gene Model | MGI Sequence Detail	31417	C57BL/6J
transcript	ENSMUST00000244280	Ensembl | MGI Sequence Detail	1604	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115193	Chr12:109915271-109915283 (+)	26,968 bp
Tssr115194	Chr12:109915324-109915335 (+)	27,021 bp