Gm56524 Gene Detail

Summary

• Symbol
  Gm56524
• Name
  predicted gene, 56524

• Feature Type
  lncRNA gene
• IDs
  MGI:7336962
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:71014928-71020225 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336962	lncRNA gene	Chr12:71014928-71020225 (+)
129S1/SvImJ	ENSMUSG00200034049	lncRNA gene	Chr12:62937215-62938057 (+)
A/J	ENSMUSG00195014955	lncRNA gene	Chr12:65625663-65626505 (+)
AKR/J	ENSMUSG00220015280	lncRNA gene	Chr12:63434179-63435021 (+)
BALB/cJ	ENSMUSG00180035574	lncRNA gene	Chr12:64624719-64625561 (+)
C3H/HeJ	ENSMUSG00175029614	lncRNA gene	Chr12:67719046-67719888 (+)
C57BL/6NJ	ENSMUSG00215030583	lncRNA gene	Chr12:64005504-64006347 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037445	lncRNA gene	Chr12:63954193-63955030 (+)
CBA/J	ENSMUSG00210031276	lncRNA gene	Chr12:64189033-64189875 (+)
DBA/2J	ENSMUSG00185004835	lncRNA gene	Chr12:66088376-66089218 (+)
FVB/NJ	ENSMUSG00205038087	lncRNA gene	Chr12:63829592-63830435 (+)
JF1/MsJ	ENSUMUG00000032607	lncRNA gene	Chr12:70061539-70062378 (+)
LP/J	ENSMUSG00230022552	lncRNA gene	Chr12:73061686-73062528 (+)
NOD/ShiLtJ	ENSMUSG00190012466	lncRNA gene	Chr12:63250529-63251371 (+)
NZO/HlLtJ	ENSMUSG00225038115	lncRNA gene	Chr12:75130992-75131834 (+)
PWK/PhJ	ENSLUMG00010031771	lncRNA gene	Chr12:64118373-64119213 (+)
SPRET/EiJ	ENSMSPG00010029083	lncRNA gene	Chr12:65810567-65811416 (+)
WSB/EiJ	ENSIUOG00005013143	lncRNA gene	Chr12:63892123-63892966 (+)

Homology

• Gene Tree
  Gm56524
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120568 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120568	Ensembl Gene Model | MGI Sequence Detail	5298	C57BL/6J
transcript	ENSMUST00000244215	Ensembl | MGI Sequence Detail	1002	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56524:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113700	Chr12:71015106-71015126 (+)	188 bp