Gm56523 Gene Detail

Summary

• Symbol
  Gm56523
• Name
  predicted gene, 56523

• Feature Type
  lncRNA gene
• IDs
  MGI:7336960
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:86935400-86969768 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  837 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336960	lncRNA gene	Chr12:86935400-86969768 (+)
129S1/SvImJ	ENSMUSG00200051416	lncRNA gene	Chr12:78957544-78958177 (+)
A/J	ENSMUSG00195035786	lncRNA gene	Chr12:81577248-81577881 (+)
AKR/J	ENSMUSG00220050206	lncRNA gene	Chr12:79373143-79373775 (+)
BALB/cJ	ENSMUSG00180027331	lncRNA gene	Chr12:80614998-80615631 (+)
C3H/HeJ	ENSMUSG00175041898	lncRNA gene	Chr12:83707939-83708571 (+)
C57BL/6NJ	ENSMUSG00215045981	lncRNA gene	Chr12:79921422-79922055 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034883	lncRNA gene	Chr12:79891734-79892368 (+)
CBA/J	ENSMUSG00210045757	lncRNA gene	Chr12:80126408-80127042 (+)
DBA/2J	ENSMUSG00185002627	lncRNA gene	Chr12:81978281-81978914 (+)
FVB/NJ	ENSMUSG00205041679	lncRNA gene	Chr12:79792758-79793390 (+)
JF1/MsJ	ENSUMUG00000048584	lncRNA gene	Chr12:85986546-85987169 (+)
LP/J	ENSMUSG00230045712	lncRNA gene	Chr12:89040462-89041095 (+)
NOD/ShiLtJ	ENSMUSG00190047876	lncRNA gene	Chr12:79185622-79186256 (+)
NZO/HlLtJ	ENSMUSG00225052627	lncRNA gene	Chr12:91077489-91078122 (+)
PWK/PhJ	ENSLUMG00010030693	lncRNA gene	Chr12:79996944-79997564 (+)
SPRET/EiJ	ENSMSPG00010001117	lncRNA gene	Chr12:81808946-81809584 (+)
WSB/EiJ	ENSIUOG00005044901	lncRNA gene	Chr12:79845956-79846586 (+)

Homology

• Gene Tree
  Gm56523
  

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120428 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120428	Ensembl Gene Model | MGI Sequence Detail	34369	C57BL/6J
transcript	ENSMUST00000243266	Ensembl | MGI Sequence Detail	1426	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;