Gm56522 Gene Detail

Summary

• Symbol
  Gm56522
• Name
  predicted gene, 56522

• Feature Type
  lncRNA gene
• IDs
  MGI:7336958
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:85518205-85518992 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336958	lncRNA gene	Chr12:85518205-85518992 (-)
129S1/SvImJ	ENSMUSG00200050808	lncRNA gene	Chr12:77533399-77534186 (-)
A/J	ENSMUSG00195034614	lncRNA gene	Chr12:80153025-80153813 (-)
AKR/J	ENSMUSG00220049400	lncRNA gene	Chr12:77948956-77949744 (-)
BALB/cJ	ENSMUSG00180024583	lncRNA gene	Chr12:79190757-79191544 (-)
C3H/HeJ	ENSMUSG00175041551	lncRNA gene	Chr12:82283844-82284632 (-)
C57BL/6NJ	ENSMUSG00215047123	lncRNA gene	Chr12:78497225-78498012 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032580	lncRNA gene	Chr12:78458841-78459628 (-)
CBA/J	ENSMUSG00210046688	lncRNA gene	Chr12:78697040-78697827 (-)
DBA/2J	ENSMUSG00185002877	lncRNA gene	Chr12:80554299-80555086 (-)
FVB/NJ	ENSMUSG00205040219	lncRNA gene	Chr12:78365813-78366600 (-)
JF1/MsJ	ENSUMUG00000047842	lncRNA gene	Chr12:84539962-84540749 (-)
LP/J	ENSMUSG00230047249	lncRNA gene	Chr12:87616509-87617296 (-)
NOD/ShiLtJ	ENSMUSG00190048387	lncRNA gene	Chr12:77754058-77754845 (-)
NZO/HlLtJ	ENSMUSG00225053591	lncRNA gene	Chr12:89653612-89654399 (-)
PWK/PhJ	ENSLUMG00010028576	lncRNA gene	Chr12:78556583-78557370 (-)
SPRET/EiJ	ENSMSPG00010022052	lncRNA gene	Chr12:80375065-80375858 (-)
WSB/EiJ	ENSIUOG00005045558	lncRNA gene	Chr12:78405523-78406310 (-)

Homology

• Gene Tree
  Gm56522
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120553 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120553	Ensembl Gene Model | MGI Sequence Detail	788	C57BL/6J
transcript	ENSMUST00000244136	Ensembl | MGI Sequence Detail	788	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117088	Chr12:85520122-85520125 (-)	-1,132 bp
Tssr117087	Chr12:85518962-85518977 (-)	22 bp
Tssr117086	Chr12:85518642-85518665 (-)	338 bp