Gm56521 Gene Detail

Summary

• Symbol
  Gm56521
• Name
  predicted gene, 56521

• Feature Type
  lncRNA gene
• IDs
  MGI:7336956
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:49995803-50081861 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1912 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336956	lncRNA gene	Chr12:49995803-50081861 (+)
129S1/SvImJ	ENSMUSG00200031575	lncRNA gene	Chr12:41935934-41937461 (+)
A/J	ENSMUSG00195018488	lncRNA gene	Chr12:44515089-44516616 (+)
AKR/J	ENSMUSG00220027749	lncRNA gene	Chr12:42552262-42553789 (+)
BALB/cJ	ENSMUSG00180006216	lncRNA gene	Chr12:43506931-43508458 (+)
C3H/HeJ	ENSMUSG00175012322	lncRNA gene	Chr12:46577582-46579109 (+)
C57BL/6NJ	ENSMUSG00215015583	lncRNA gene	Chr12:42942969-42944496 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009302	lncRNA gene	Chr12:43104261-43105787 (+)
CBA/J	ENSMUSG00210010053	lncRNA gene	Chr12:43041689-43043216 (+)
DBA/2J	ENSMUSG00185014831	lncRNA gene	Chr12:45033973-45035500 (+)
FVB/NJ	ENSMUSG00205014545	lncRNA gene	Chr12:42853658-42855185 (+)
JF1/MsJ	ENSUMUG00000003473	lncRNA gene	Chr12:49161952-49163476 (+)
LP/J	ENSMUSG00230016854	lncRNA gene	Chr12:52058629-52060156 (+)
NOD/ShiLtJ	ENSMUSG00190016188	lncRNA gene	Chr12:42051683-42053210 (+)
NZO/HlLtJ	ENSMUSG00225041222	lncRNA gene	Chr12:54203184-54204711 (+)
PWK/PhJ	ENSLUMG00010016913	lncRNA gene	Chr12:43256087-43257610 (+)
SPRET/EiJ	ENSMSPG00010016430	lncRNA gene	Chr12:44552080-44553603 (+)
WSB/EiJ	ENSIUOG00005003760	lncRNA gene	Chr12:42866216-42867743 (+)

Homology

• Gene Tree
  Gm56521
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120526 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120526	Ensembl Gene Model | MGI Sequence Detail	86059	C57BL/6J
transcript	ENSMUST00000243990	Ensembl | MGI Sequence Detail	1532	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56521:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113410	Chr12:49995984-49996001 (+)	190 bp