Gm56520 Gene Detail

Summary

• Symbol
  Gm56520
• Name
  predicted gene, 56520

• Feature Type
  lncRNA gene
• IDs
  MGI:7336954
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:80016270-80017498 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336954	lncRNA gene	Chr12:80016270-80017498 (+)
129S1/SvImJ	ENSMUSG00200050623	lncRNA gene	Chr12:71986452-71987505 (+)
A/J	ENSMUSG00195033489	lncRNA gene	Chr12:74679012-74680065 (+)
AKR/J	ENSMUSG00220050586	lncRNA gene	Chr12:72468392-72469445 (+)
BALB/cJ	ENSMUSG00180025496	lncRNA gene	Chr12:73649695-73650748 (+)
C3H/HeJ	ENSMUSG00175045524	lncRNA gene	Chr12:76811297-76812350 (+)
C57BL/6NJ	ENSMUSG00215047314	lncRNA gene	Chr12:73016134-73017187 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035413	lncRNA gene	Chr12:72940831-72941874 (+)
CBA/J	ENSMUSG00210048158	lncRNA gene	Chr12:73225523-73226576 (+)
DBA/2J	ENSMUSG00185043729	lncRNA gene	Chr12:75086259-75087312 (+)
FVB/NJ	ENSMUSG00205044945	lncRNA gene	Chr12:72830729-72831782 (+)
JF1/MsJ	ENSUMUG00000026242	lncRNA gene	Chr12:79070724-79071761 (+)
LP/J	ENSMUSG00230046430	lncRNA gene	Chr12:82104588-82105641 (+)
NOD/ShiLtJ	ENSMUSG00190049522	lncRNA gene	Chr12:72287263-72288316 (+)
NZO/HlLtJ	ENSMUSG00225052163	lncRNA gene	Chr12:84156219-84157272 (+)
PWK/PhJ	ENSLUMG00010028461	lncRNA gene	Chr12:73090419-73091459 (+)
SPRET/EiJ	ENSMSPG00010021591	lncRNA gene	Chr12:74906295-74907345 (+)
WSB/EiJ	ENSIUOG00005046159	lncRNA gene	Chr12:72899365-72900418 (+)

Homology

• Gene Tree
  Gm56520
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120506 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120506	Ensembl Gene Model | MGI Sequence Detail	1229	C57BL/6J
transcript	ENSMUST00000243841	Ensembl | MGI Sequence Detail	462	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56520:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114125	Chr12:80016379-80016429 (+)	134 bp