Gm56514 Gene Detail

Summary

• Symbol
  Gm56514
• Name
  predicted gene, 56514

• Feature Type
  lncRNA gene
• IDs
  MGI:7336942
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:80971321-80985653 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  419 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336942	lncRNA gene	Chr12:80971321-80985653 (-)
129S1/SvImJ	ENSMUSG00200051080	lncRNA gene	Chr12:72947577-72948360 (-)
A/J	ENSMUSG00195035185	lncRNA gene	Chr12:75641215-75641998 (-)
AKR/J	ENSMUSG00220049156	lncRNA gene	Chr12:73430593-73431376 (-)
BALB/cJ	ENSMUSG00180024893	lncRNA gene	Chr12:74611846-74612629 (-)
C3H/HeJ	ENSMUSG00175043961	lncRNA gene	Chr12:77773359-77774142 (-)
C57BL/6NJ	ENSMUSG00215047199	lncRNA gene	Chr12:73977329-73978112 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033990	lncRNA gene	Chr12:73899490-73900272 (-)
CBA/J	ENSMUSG00210046155	lncRNA gene	Chr12:74187642-74188425 (-)
DBA/2J	ENSMUSG00185043871	lncRNA gene	Chr12:76048399-76049182 (-)
FVB/NJ	ENSMUSG00205038602	lncRNA gene	Chr12:73787496-73788279 (-)
JF1/MsJ	ENSUMUG00000023938	lncRNA gene	Chr12:80027068-80027851 (-)
LP/J	ENSMUSG00230046127	lncRNA gene	Chr12:83065656-83066439 (-)
NOD/ShiLtJ	ENSMUSG00190048106	lncRNA gene	Chr12:73243159-73243942 (-)
NZO/HlLtJ	ENSMUSG00225052027	lncRNA gene	Chr12:85118965-85119748 (-)
PWK/PhJ	ENSLUMG00010030152	lncRNA gene	Chr12:74039696-74040479 (-)
SPRET/EiJ	ENSMSPG00010019897	lncRNA gene	Chr12:75869197-75869974 (-)
WSB/EiJ	ENSIUOG00005044640	lncRNA gene	Chr12:73860185-73860968 (-)

Homology

• Gene Tree
  Gm56514
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000120386 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120386	Ensembl Gene Model | MGI Sequence Detail	14333	C57BL/6J
transcript	ENSMUST00000252130	Ensembl | MGI Sequence Detail	1378	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56514:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116898	Chr12:80978219-80978225 (-)	7,431 bp