Gm56513 Gene Detail

Summary

• Symbol
  Gm56513
• Name
  predicted gene, 56513

• Feature Type
  lncRNA gene
• IDs
  MGI:7336940
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:16582656-16584304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336940	lncRNA gene	Chr12:16582656-16584304 (+)
129S1/SvImJ	ENSMUSG00200023522	lncRNA gene	Chr12:13630915-13632565 (+)
A/J	ENSMUSG00195021752	lncRNA gene	Chr12:13640969-13642619 (+)
AKR/J	ENSMUSG00220029743	lncRNA gene	Chr12:13727634-13729284 (+)
BALB/cJ	ENSMUSG00180010717	lncRNA gene	Chr12:13619610-13621260 (+)
C3H/HeJ	ENSMUSG00175005946	lncRNA gene	Chr12:13651283-13652933 (+)
C57BL/6NJ	ENSMUSG00215006440	lncRNA gene	Chr12:13416973-13418621 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006252	lncRNA gene	Chr12:13140317-13141967 (+)
CBA/J	ENSMUSG00210008103	lncRNA gene	Chr12:13663146-13664796 (+)
DBA/2J	ENSMUSG00185004330	lncRNA gene	Chr12:13577455-13579105 (+)
FVB/NJ	ENSMUSG00205001738	lncRNA gene	Chr12:13529978-13531627 (+)
JF1/MsJ	ENSUMUG00000011192	lncRNA gene	Chr12:13488386-13490034 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014509	lncRNA gene	Chr12:14858174-14859824 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004537	lncRNA gene	Chr12:13268623-13270271 (+)
SPRET/EiJ	ENSMSPG00010002993	lncRNA gene	Chr12:14240423-14242072 (+)
WSB/EiJ	ENSIUOG00005001902	lncRNA gene	Chr12:13636220-13637870 (+)

Homology

• Gene Tree
  Gm56513
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000120341 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120341	Ensembl Gene Model | MGI Sequence Detail	1649	C57BL/6J
transcript	ENSMUST00000242670	Ensembl | MGI Sequence Detail	1649	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56513:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112845	Chr12:16582663-16582672 (+)	12 bp
Tssr3800	Chr12:16582779-16582792 (+)	130 bp