Gm56512 Gene Detail

Summary

• Symbol
  Gm56512
• Name
  predicted gene, 56512

• Feature Type
  lncRNA gene
• IDs
  MGI:7336938
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:8723003-8724120 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336938	lncRNA gene	Chr12:8723003-8724120 (-)
129S1/SvImJ	ENSMUSG00200024292	lncRNA gene	Chr12:5694621-5695106 (-)
A/J	ENSMUSG00195017478	lncRNA gene	Chr12:5743555-5744040 (-)
AKR/J	ENSMUSG00220031906	lncRNA gene	Chr12:5771998-5772483 (-)
BALB/cJ	ENSMUSG00180015138	lncRNA gene	Chr12:5736089-5736574 (-)
C3H/HeJ	ENSMUSG00175009572	lncRNA gene	Chr12:5724792-5725277 (-)
C57BL/6NJ	ENSMUSG00215026396	lncRNA gene	Chr12:5559313-5559798 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023349	lncRNA gene	Chr12:5417865-5418350 (-)
CBA/J	ENSMUSG00210013604	lncRNA gene	Chr12:5755570-5756055 (-)
DBA/2J	ENSMUSG00185021643	lncRNA gene	Chr12:5698374-5698859 (-)
FVB/NJ	ENSMUSG00205003612	lncRNA gene	Chr12:5454966-5455451 (-)
JF1/MsJ	ENSUMUG00000035958	lncRNA gene	Chr12:5659242-5659728 (-)
LP/J	ENSMUSG00230012426	lncRNA gene	Chr12:7528296-7528781 (-)
NOD/ShiLtJ	ENSMUSG00190008008	lncRNA gene	Chr12:6942555-6943040 (-)
NZO/HlLtJ	ENSMUSG00225019497	lncRNA gene	Chr12:9607538-9608023 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010005242	lncRNA gene	Chr12:6004310-6004804 (-)
WSB/EiJ	ENSIUOG00005002468	lncRNA gene	Chr12:5732672-5733157 (-)

Homology

• Gene Tree
  Gm56512
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120222 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120222	Ensembl Gene Model | MGI Sequence Detail	1118	C57BL/6J
transcript	ENSMUST00000241962	Ensembl | MGI Sequence Detail	1118	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56512:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115722	Chr12:8724832-8724846 (-)	-719 bp
Tssr115721	Chr12:8724630-8724670 (-)	-530 bp
Tssr115720	Chr12:8724064-8724094 (-)	41 bp