Gm56508 Gene Detail

Summary

• Symbol
  Gm56508
• Name
  predicted gene, 56508

• Feature Type
  lncRNA gene
• IDs
  MGI:7336930
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:12389245-12393168 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336930	lncRNA gene	Chr18:12389245-12393168 (+)
129S1/SvImJ	ENSMUSG00200025706	lncRNA gene	Chr18:9322844-9326767 (+)
A/J	ENSMUSG00195009001	lncRNA gene	Chr18:9517490-9521413 (+)
AKR/J	ENSMUSG00220019535	lncRNA gene	Chr18:9511965-9515888 (+)
BALB/cJ	ENSMUSG00180005734	lncRNA gene	Chr18:9965448-9969444 (+)
C3H/HeJ	ENSMUSG00175008265	lncRNA gene	Chr18:9504764-9508758 (+)
C57BL/6NJ	ENSMUSG00215020830	lncRNA gene	Chr18:9228009-9231932 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017719	lncRNA gene	Chr18:9288667-9292698 (+)
CBA/J	ENSMUSG00210022024	lncRNA gene	Chr18:9513629-9517623 (+)
DBA/2J	ENSMUSG00185031126	lncRNA gene	Chr18:9522874-9526797 (+)
FVB/NJ	ENSMUSG00205037055	lncRNA gene	Chr18:9292177-9296166 (+)
JF1/MsJ	ENSUMUG00000039984	lncRNA gene	Chr18:9562557-9566480 (+)
LP/J	ENSMUSG00230012729	lncRNA gene	Chr18:11567128-11571051 (+)
NOD/ShiLtJ	ENSMUSG00190010413	lncRNA gene	Chr18:9287397-9291320 (+)
NZO/HlLtJ	ENSMUSG00225027997	lncRNA gene	Chr18:11504671-11508594 (+)
PWK/PhJ	ENSLUMG00010009497	lncRNA gene	Chr18:9780434-9784355 (+)
SPRET/EiJ	ENSMSPG00010011863	lncRNA gene	Chr18:9440155-9444086 (+)
WSB/EiJ	ENSIUOG00005027801	lncRNA gene	Chr18:9390510-9394455 (+)

Homology

• Gene Tree
  Gm56508
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120636 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120636	Ensembl Gene Model | MGI Sequence Detail	3924	C57BL/6J
transcript	ENSMUST00000244776	Ensembl | MGI Sequence Detail	1066	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56508:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150090	Chr18:12389239-12389263 (+)	6 bp
Tssr150091	Chr18:12389277-12389299 (+)	43 bp
Tssr150092	Chr18:12389346-12389353 (+)	105 bp