Gm56504 Gene Detail

Summary

• Symbol
  Gm56504
• Name
  predicted gene, 56504

• Feature Type
  lncRNA gene
• IDs
  MGI:7336922
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:84104691-84104857 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336922	lncRNA gene	Chr18:84104691-84104857 (-)
129S1/SvImJ	ENSMUSG00200015454	lncRNA gene	Chr18:81340525-81340690 (-)
A/J	ENSMUSG00195001307	lncRNA gene	Chr18:81415116-81415282 (-)
AKR/J	ENSMUSG00220016884	lncRNA gene	Chr18:81330894-81331060 (-)
BALB/cJ	ENSMUSG00180002631	lncRNA gene	Chr18:81981861-81982027 (-)
C3H/HeJ	ENSMUSG00175018944	lncRNA gene	Chr18:81528921-81529087 (-)
C57BL/6NJ	ENSMUSG00215025155	lncRNA gene	Chr18:80898766-80898932 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028995	lncRNA gene	Chr18:80442935-80443100 (-)
CBA/J	ENSMUSG00210018195	lncRNA gene	Chr18:81475219-81475385 (-)
DBA/2J	ENSMUSG00185004321	lncRNA gene	Chr18:81377702-81377868 (-)
FVB/NJ	ENSMUSG00205014221	lncRNA gene	Chr18:80784268-80784434 (-)
JF1/MsJ	ENSUMUG00000019037	lncRNA gene	Chr18:81234579-81234744 (-)
LP/J	ENSMUSG00230018136	lncRNA gene	Chr18:83429413-83429578 (-)
NOD/ShiLtJ	ENSMUSG00190003435	lncRNA gene	Chr18:81207688-81207855 (-)
NZO/HlLtJ	ENSMUSG00225023613	lncRNA gene	Chr18:83311731-83311896 (-)
PWK/PhJ	ENSLUMG00010004148	lncRNA gene	Chr18:81641545-81641710 (-)
SPRET/EiJ	ENSMSPG00010001309	lncRNA gene	Chr18:82010059-82010224 (-)
WSB/EiJ	ENSIUOG00005008067	lncRNA gene	Chr18:80827458-80827623 (-)

Homology

• Gene Tree
  Gm56504
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120643 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120643	Ensembl Gene Model | MGI Sequence Detail	167	C57BL/6J
transcript	ENSMUST00000244803	Ensembl | MGI Sequence Detail	167	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154125	Chr18:84104871-84104883 (-)	-20 bp