Gm56501 Gene Detail

Summary

• Symbol
  Gm56501
• Name
  predicted gene, 56501

• Feature Type
  lncRNA gene
• IDs
  MGI:7336916
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:68140579-68142800 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336916	lncRNA gene	Chr18:68140579-68142800 (+)
129S1/SvImJ	ENSMUSG00200025282	lncRNA gene	Chr18:65335678-65337886 (+)
A/J	ENSMUSG00195033916	lncRNA gene	Chr18:65385923-65388108 (+)
AKR/J	ENSMUSG00220023485	lncRNA gene	Chr18:65350172-65352381 (+)
BALB/cJ	ENSMUSG00180012662	lncRNA gene	Chr18:65953010-65955195 (+)
C3H/HeJ	ENSMUSG00175010406	lncRNA gene	Chr18:65553104-65555312 (+)
C57BL/6NJ	ENSMUSG00215023216	lncRNA gene	Chr18:64900470-64902646 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016089	lncRNA gene	Chr18:64553768-64555957 (+)
CBA/J	ENSMUSG00210032555	lncRNA gene	Chr18:65505823-65508031 (+)
DBA/2J	ENSMUSG00185029850	lncRNA gene	Chr18:65417231-65419439 (+)
FVB/NJ	ENSMUSG00205014782	lncRNA gene	Chr18:64878676-64880861 (+)
JF1/MsJ	ENSUMUG00000044873	lncRNA gene	Chr18:65333431-65335629 (+)
LP/J	ENSMUSG00230039248	lncRNA gene	Chr18:67468094-67470302 (+)
NOD/ShiLtJ	ENSMUSG00190008494	lncRNA gene	Chr18:65138425-65140610 (+)
NZO/HlLtJ	ENSMUSG00225030407	lncRNA gene	Chr18:67355832-67358017 (+)
PWK/PhJ	ENSLUMG00010026836	lncRNA gene	Chr18:65738503-65740701 (+)
SPRET/EiJ	ENSMSPG00010039348	lncRNA gene	Chr18:65901881-65904022 (+)
WSB/EiJ	ENSIUOG00005006357	lncRNA gene	Chr18:64956382-64958589 (+)

Homology

• Gene Tree
  Gm56501
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120583 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120583	Ensembl Gene Model | MGI Sequence Detail	2222	C57BL/6J
transcript	ENSMUST00000244338	Ensembl | MGI Sequence Detail	2222	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5362	Chr18:68140569-68140580 (+)	-4 bp