Gm56500 Gene Detail

Summary

• Symbol
  Gm56500
• Name
  predicted gene, 56500

• Feature Type
  lncRNA gene
• IDs
  MGI:7336914
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:82777758-82777917 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336914	lncRNA gene	Chr18:82777758-82777917 (-)
129S1/SvImJ	ENSMUSG00200029853	lncRNA gene	Chr18:79988792-79988951 (-)
A/J	ENSMUSG00195005022	lncRNA gene	Chr18:80086557-80086716 (-)
AKR/J	ENSMUSG00220017379	lncRNA gene	Chr18:80006096-80006255 (-)
BALB/cJ	ENSMUSG00180013728	lncRNA gene	Chr18:80653278-80653437 (-)
C3H/HeJ	ENSMUSG00175012937	lncRNA gene	Chr18:80193494-80193653 (-)
C57BL/6NJ	ENSMUSG00215027685	lncRNA gene	Chr18:79572429-79572588 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030003	lncRNA gene	Chr18:79104843-79105002 (-)
CBA/J	ENSMUSG00210035495	lncRNA gene	Chr18:80143977-80144136 (-)
DBA/2J	ENSMUSG00185011998	lncRNA gene	Chr18:80049282-80049441 (-)
FVB/NJ	ENSMUSG00205018217	lncRNA gene	Chr18:79457317-79457476 (-)
JF1/MsJ	ENSUMUG00000034046	lncRNA gene	Chr18:79938851-79939010 (-)
LP/J	ENSMUSG00230018591	lncRNA gene	Chr18:82090971-82091130 (-)
NOD/ShiLtJ	ENSMUSG00190025266	lncRNA gene	Chr18:79874360-79874519 (-)
NZO/HlLtJ	ENSMUSG00225023548	lncRNA gene	Chr18:81974321-81974480 (-)
PWK/PhJ	ENSLUMG00010007077	lncRNA gene	Chr18:80334321-80334501 (-)
SPRET/EiJ	ENSMSPG00010009294	lncRNA gene	Chr18:80695175-80695355 (-)
WSB/EiJ	ENSIUOG00005008458	lncRNA gene	Chr18:79506857-79507016 (-)

Homology

• Gene Tree
  Gm56500
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120537 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120537	Ensembl Gene Model | MGI Sequence Detail	160	C57BL/6J
transcript	ENSMUST00000244059	Ensembl | MGI Sequence Detail	160	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56500:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154094	Chr18:82777906-82777917 (-)	5 bp