Gm56499 Gene Detail

Summary

• Symbol
  Gm56499
• Name
  predicted gene, 56499

• Feature Type
  lncRNA gene
• IDs
  MGI:7336912
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:65170976-65173777 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336912	lncRNA gene	Chr18:65170976-65173777 (-)
129S1/SvImJ	ENSMUSG00200025411	lncRNA gene	Chr18:62359150-62361652 (-)
A/J	ENSMUSG00195034853	lncRNA gene	Chr18:62403618-62406099 (-)
AKR/J	ENSMUSG00220023351	lncRNA gene	Chr18:62367371-62369848 (-)
BALB/cJ	ENSMUSG00180012708	lncRNA gene	Chr18:62970599-62973080 (-)
C3H/HeJ	ENSMUSG00175010628	lncRNA gene	Chr18:62574913-62577394 (-)
C57BL/6NJ	ENSMUSG00215022855	lncRNA gene	Chr18:61911186-61913688 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016046	lncRNA gene	Chr18:61575158-61577639 (-)
CBA/J	ENSMUSG00210031487	lncRNA gene	Chr18:62532853-62535334 (-)
DBA/2J	ENSMUSG00185030766	lncRNA gene	Chr18:62438463-62440965 (-)
FVB/NJ	ENSMUSG00205014078	lncRNA gene	Chr18:61908014-61910493 (-)
JF1/MsJ	ENSUMUG00000044041	lncRNA gene	Chr18:62341951-62344433 (-)
LP/J	ENSMUSG00230039916	lncRNA gene	Chr18:64501836-64504313 (-)
NOD/ShiLtJ	ENSMUSG00190008326	lncRNA gene	Chr18:62176944-62179421 (-)
NZO/HlLtJ	ENSMUSG00225030770	lncRNA gene	Chr18:64387753-64390253 (-)
PWK/PhJ	ENSLUMG00010027067	lncRNA gene	Chr18:62743067-62745551 (-)
SPRET/EiJ	ENSMSPG00010040652	lncRNA gene	Chr18:62888196-62890657 (-)
WSB/EiJ	ENSIUOG00005006418	lncRNA gene	Chr18:61967676-61970153 (-)

Homology

• Gene Tree
  Gm56499
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120534 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120534	Ensembl Gene Model | MGI Sequence Detail	2802	C57BL/6J
transcript	ENSMUST00000244042	Ensembl | MGI Sequence Detail	2802	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56499:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153685	Chr18:65173801-65173812 (-)	-30 bp
Tssr153684	Chr18:65173764-65173781 (-)	4 bp