Gm56498 Gene Detail

Summary

• Symbol
  Gm56498
• Name
  predicted gene, 56498

• Feature Type
  lncRNA gene
• IDs
  MGI:7336910
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:77912824-77917220 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  308 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336910	lncRNA gene	Chr18:77912824-77917220 (+)
129S1/SvImJ	ENSMUSG00200029392	lncRNA gene	Chr18:75150260-75154410 (+)
A/J	ENSMUSG00195005076	lncRNA gene	Chr18:75201019-75205152 (+)
AKR/J	ENSMUSG00220017469	lncRNA gene	Chr18:75142734-75146863 (+)
BALB/cJ	ENSMUSG00180013993	lncRNA gene	Chr18:75771461-75775594 (+)
C3H/HeJ	ENSMUSG00175013179	lncRNA gene	Chr18:75323148-75327281 (+)
C57BL/6NJ	ENSMUSG00215030659	lncRNA gene	Chr18:74679258-74683387 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029922	lncRNA gene	Chr18:74224623-74228774 (+)
CBA/J	ENSMUSG00210037144	lncRNA gene	Chr18:75280433-75284562 (+)
DBA/2J	ENSMUSG00185011809	lncRNA gene	Chr18:75185979-75190112 (+)
FVB/NJ	ENSMUSG00205017871	lncRNA gene	Chr18:74804224-74808382 (+)
JF1/MsJ	ENSUMUG00000039541	lncRNA gene	Chr18:75111647-75115763 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190024347	lncRNA gene	Chr18:74943664-74947793 (+)
NZO/HlLtJ	ENSMUSG00225034608	lncRNA gene	Chr18:77118021-77122150 (+)
PWK/PhJ	ENSLUMG00010007165	lncRNA gene	Chr18:75509423-75513570 (+)
SPRET/EiJ	ENSMSPG00010009891	lncRNA gene	Chr18:75780181-75784288 (+)
WSB/EiJ	ENSIUOG00005008601	lncRNA gene	Chr18:74673400-74677543 (+)

Homology

• Gene Tree
  Gm56498
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120499 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120499	Ensembl Gene Model | MGI Sequence Detail	4397	C57BL/6J
transcript	ENSMUST00000243758	Ensembl | MGI Sequence Detail	955	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56498:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152056	Chr18:77913079-77913101 (+)	266 bp