Gm56497 Gene Detail

Summary

• Symbol
  Gm56497
• Name
  predicted gene, 56497

• Feature Type
  lncRNA gene
• IDs
  MGI:7336908
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:38675897-38676640 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336908	lncRNA gene	Chr18:38675897-38676640 (+)
129S1/SvImJ	ENSMUSG00200044389	lncRNA gene	Chr18:35673681-35674423 (+)
A/J	ENSMUSG00195038252	lncRNA gene	Chr18:35826302-35827044 (+)
AKR/J	ENSMUSG00220017474	lncRNA gene	Chr18:35794317-35795059 (+)
BALB/cJ	ENSMUSG00180021661	lncRNA gene	Chr18:36275920-36276662 (+)
C3H/HeJ	ENSMUSG00175042113	lncRNA gene	Chr18:35791763-35792506 (+)
C57BL/6NJ	ENSMUSG00215028411	lncRNA gene	Chr18:35546051-35546793 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024005	lncRNA gene	Chr18:35412652-35413399 (+)
CBA/J	ENSMUSG00210021677	lncRNA gene	Chr18:35817907-35818649 (+)
DBA/2J	ENSMUSG00185020901	lncRNA gene	Chr18:35752495-35753237 (+)
FVB/NJ	ENSMUSG00205033315	lncRNA gene	Chr18:35462007-35462750 (+)
JF1/MsJ	ENSUMUG00000047787	lncRNA gene	Chr18:35892223-35892969 (+)
LP/J	ENSMUSG00230048696	lncRNA gene	Chr18:37867772-37868514 (+)
NOD/ShiLtJ	ENSMUSG00190022048	lncRNA gene	Chr18:35540095-35540838 (+)
NZO/HlLtJ	ENSMUSG00225047418	lncRNA gene	Chr18:37774431-37775173 (+)
PWK/PhJ	ENSLUMG00010013544	lncRNA gene	Chr18:36041614-36042359 (+)
SPRET/EiJ	ENSMSPG00010024103	lncRNA gene	Chr18:36062882-36063627 (+)
WSB/EiJ	ENSIUOG00005007992	lncRNA gene	Chr18:35533935-35534677 (+)

Homology

• Gene Tree
  Gm56497
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120394 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120394	Ensembl Gene Model | MGI Sequence Detail	744	C57BL/6J
transcript	ENSMUST00000243027	Ensembl | MGI Sequence Detail	744	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56497:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150803	Chr18:38675931-38675959 (+)	48 bp