Gm56496 Gene Detail

Summary

• Symbol
  Gm56496
• Name
  predicted gene, 56496

• Feature Type
  lncRNA gene
• IDs
  MGI:7336906
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr18:36669169-36739209 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1236 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336906	lncRNA gene	Chr18:36669169-36739209 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56496
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000119977 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119977	Ensembl Gene Model | MGI Sequence Detail	70041	C57BL/6J
transcript	ENSMUST00000241066	Ensembl | MGI Sequence Detail	1570	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56496:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152942	Chr18:36739144-36739180 (-)	47 bp
Tssr152941	Chr18:36693258-36693283 (-)	45,938 bp
Tssr152940	Chr18:36693206-36693231 (-)	45,990 bp
Tssr152939	Chr18:36692940-36692965 (-)	46,256 bp
Tssr152938	Chr18:36692884-36692904 (-)	46,315 bp