Gm56495 Gene Detail

Summary

• Symbol
  Gm56495
• Name
  predicted gene, 56495

• Feature Type
  lncRNA gene
• IDs
  MGI:7336904
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:25887441-25992477 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2336 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336904	lncRNA gene	Chr18:25887441-25992477 (+)
129S1/SvImJ	ENSMUSG00200016430	lncRNA gene	Chr18:22885034-22910236 (+)
A/J	ENSMUSG00195002490	lncRNA gene	Chr18:23052937-23078165 (+)
AKR/J	ENSMUSG00220011473	lncRNA gene	Chr18:23040997-23066204 (+)
BALB/cJ	ENSMUSG00180003609	lncRNA gene	Chr18:23493160-23518387 (+)
C3H/HeJ	ENSMUSG00175024572	lncRNA gene	Chr18:23019955-23045150 (+)
C57BL/6NJ	ENSMUSG00215025413	lncRNA gene	Chr18:22744859-22770085 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016409	lncRNA gene	Chr18:22725460-22750853 (+)
CBA/J	ENSMUSG00210016232	lncRNA gene	Chr18:23043837-23069067 (+)
DBA/2J	ENSMUSG00185023310	lncRNA gene	Chr18:22991908-23017139 (+)
FVB/NJ	ENSMUSG00205025095	lncRNA gene	Chr18:22710436-22735660 (+)
JF1/MsJ	ENSUMUG00000029003	lncRNA gene	Chr18:23086588-23112059 (+)
LP/J	ENSMUSG00230006214	lncRNA gene	Chr18:25080861-25106058 (+)
NOD/ShiLtJ	ENSMUSG00190007188	lncRNA gene	Chr18:22800525-22825748 (+)
NZO/HlLtJ	ENSMUSG00225025649	lncRNA gene	Chr18:25043928-25069154 (+)
PWK/PhJ	ENSLUMG00010003689	lncRNA gene	Chr18:23275711-23301032 (+)
SPRET/EiJ	ENSMSPG00010022570	lncRNA gene	Chr18:23169171-23194460 (+)
WSB/EiJ	ENSIUOG00005002893	lncRNA gene	Chr18:22824027-22849232 (+)

Homology

• Gene Tree
  Gm56495
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000120137 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120137	Ensembl Gene Model | MGI Sequence Detail	105037	C57BL/6J
transcript	ENSMUST00000288396	Ensembl | MGI Sequence Detail	1470	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56495:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150331	Chr18:25886313-25886330 (+)	-1,119 bp
Tssr150332	Chr18:25887438-25887444 (+)	0 bp