Gm56494 Gene Detail

Summary

• Symbol
  Gm56494
• Name
  predicted gene, 56494

• Feature Type
  lncRNA gene
• IDs
  MGI:7336902
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:77148188-77152880 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336902	lncRNA gene	Chr18:77148188-77152880 (-)
129S1/SvImJ	ENSMUSG00200029716	lncRNA gene	Chr18:74370558-74371820 (-)
A/J	ENSMUSG00195004938	lncRNA gene	Chr18:74438218-74439480 (-)
AKR/J	ENSMUSG00220017671	lncRNA gene	Chr18:74379948-74381210 (-)
BALB/cJ	ENSMUSG00180013670	lncRNA gene	Chr18:75008706-75009968 (-)
C3H/HeJ	ENSMUSG00175012944	lncRNA gene	Chr18:74566964-74568268 (-)
C57BL/6NJ	ENSMUSG00215026471	lncRNA gene	Chr18:73916900-73918162 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030277	lncRNA gene	Chr18:73455854-73457153 (-)
CBA/J	ENSMUSG00210038000	lncRNA gene	Chr18:74524281-74525585 (-)
DBA/2J	ENSMUSG00185011821	lncRNA gene	Chr18:74430563-74431867 (-)
FVB/NJ	ENSMUSG00205017930	lncRNA gene	Chr18:74049447-74050709 (-)
JF1/MsJ	ENSUMUG00000038846	lncRNA gene	Chr18:74340057-74341357 (-)
LP/J	ENSMUSG00230014226	lncRNA gene	Chr18:76486577-76487839 (-)
NOD/ShiLtJ	ENSMUSG00190022754	lncRNA gene	Chr18:74180981-74182243 (-)
NZO/HlLtJ	ENSMUSG00225034910	lncRNA gene	Chr18:76350637-76351899 (-)
PWK/PhJ	ENSLUMG00010007079	lncRNA gene	Chr18:74750411-74751710 (-)
SPRET/EiJ	ENSMSPG00010009703	lncRNA gene	Chr18:75031544-75032843 (-)
WSB/EiJ	ENSIUOG00005008369	lncRNA gene	Chr18:73962545-73963850 (-)

Homology

• Gene Tree
  Gm56494
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000119947 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119947	Ensembl Gene Model | MGI Sequence Detail	4693	C57BL/6J
transcript	ENSMUST00000240784	Ensembl | MGI Sequence Detail	1667	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56494:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5378	Chr18:77153254-77153268 (-)	-381 bp