Gm56493 Gene Detail

Summary

• Symbol
  Gm56493
• Name
  predicted gene, 56493

• Feature Type
  lncRNA gene
• IDs
  MGI:7336900
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:36052868-36093711 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1017 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336900	lncRNA gene	Chr18:36052868-36093711 (+)
129S1/SvImJ	ENSMUSG00200044395	lncRNA gene	Chr18:33074343-33092332 (+)
A/J	ENSMUSG00195037319	lncRNA gene	Chr18:33241233-33259208 (+)
AKR/J	ENSMUSG00220017363	lncRNA gene	Chr18:33217390-33235378 (+)
BALB/cJ	ENSMUSG00180023208	lncRNA gene	Chr18:33690867-33708828 (+)
C3H/HeJ	ENSMUSG00175039221	lncRNA gene	Chr18:33198334-33216394 (+)
C57BL/6NJ	ENSMUSG00215031507	lncRNA gene	Chr18:32944444-32962429 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025578	lncRNA gene	Chr18:32855175-32873307 (+)
CBA/J	ENSMUSG00210021835	lncRNA gene	Chr18:33232975-33250945 (+)
DBA/2J	ENSMUSG00185021235	lncRNA gene	Chr18:33167555-33185536 (+)
FVB/NJ	ENSMUSG00205037359	lncRNA gene	Chr18:32879228-32897208 (+)
JF1/MsJ	ENSUMUG00000047072	lncRNA gene	Chr18:33325509-33343403 (+)
LP/J	ENSMUSG00230049328	lncRNA gene	Chr18:35271112-35289101 (+)
NOD/ShiLtJ	ENSMUSG00190022544	lncRNA gene	Chr18:32952143-32970203 (+)
NZO/HlLtJ	ENSMUSG00225046847	lncRNA gene	Chr18:35175921-35193907 (+)
PWK/PhJ	ENSLUMG00010013643	lncRNA gene	Chr18:33476507-33494437 (+)
SPRET/EiJ	ENSMSPG00010023030	lncRNA gene	Chr18:33526237-33544446 (+)
WSB/EiJ	ENSIUOG00005007876	lncRNA gene	Chr18:32938933-32956983 (+)

Homology

• Gene Tree
  Gm56493
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120345 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120345	Ensembl Gene Model | MGI Sequence Detail	40844	C57BL/6J
transcript	ENSMUST00000242686	Ensembl | MGI Sequence Detail	1488	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56493:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150585	Chr18:36075422-36075462 (+)	22,574 bp