Gm56492 Gene Detail

Summary

• Symbol
  Gm56492
• Name
  predicted gene, 56492

• Feature Type
  lncRNA gene
• IDs
  MGI:7336898
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:84607648-84647064 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336898	lncRNA gene	Chr18:84607648-84647064 (+)
129S1/SvImJ	ENSMUSG00200015478	lncRNA gene	Chr18:81843014-81850119 (+)
A/J	ENSMUSG00195001355	lncRNA gene	Chr18:81918431-81925512 (+)
AKR/J	ENSMUSG00220016774	lncRNA gene	Chr18:81834241-81841323 (+)
BALB/cJ	ENSMUSG00180002624	lncRNA gene	Chr18:82485215-82492296 (+)
C3H/HeJ	ENSMUSG00175018903	lncRNA gene	Chr18:82032244-82039325 (+)
C57BL/6NJ	ENSMUSG00215004316	lncRNA gene	Chr18:81402084-81409165 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005531	lncRNA gene	Chr18:80951088-80958267 (+)
CBA/J	ENSMUSG00210018302	lncRNA gene	Chr18:81978481-81985562 (+)
DBA/2J	ENSMUSG00185004387	lncRNA gene	Chr18:81880979-81888060 (+)
FVB/NJ	ENSMUSG00205014189	lncRNA gene	Chr18:81287518-81294599 (+)
JF1/MsJ	ENSUMUG00000018136	lncRNA gene	Chr18:81734601-81741742 (+)
LP/J	ENSMUSG00230018027	lncRNA gene	Chr18:83931871-83938976 (+)
NOD/ShiLtJ	ENSMUSG00190003487	lncRNA gene	Chr18:81710346-81717338 (+)
NZO/HlLtJ	ENSMUSG00225023579	lncRNA gene	Chr18:83824107-83831206 (+)
PWK/PhJ	ENSLUMG00010004088	lncRNA gene	Chr18:82146107-82153245 (+)
SPRET/EiJ	ENSMSPG00010001335	lncRNA gene	Chr18:82518209-82525324 (+)
WSB/EiJ	ENSIUOG00005016369	lncRNA gene	Chr18:81332095-81339196 (+)

Homology

• Gene Tree
  Gm56492
  

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000120353 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120353	Ensembl Gene Model | MGI Sequence Detail	39417	C57BL/6J
transcript	ENSMUST00000268560	Ensembl | MGI Sequence Detail	3317	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56492:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152211	Chr18:84607906-84607933 (+)	272 bp