Gm56491 Gene Detail

Summary

• Symbol
  Gm56491
• Name
  predicted gene, 56491

• Feature Type
  lncRNA gene
• IDs
  MGI:7336896
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:53165738-53169746 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336896	lncRNA gene	Chr18:53165738-53169746 (-)
129S1/SvImJ	ENSMUSG00200030590	lncRNA gene	Chr18:50198730-50199708 (-)
A/J	ENSMUSG00195025827	lncRNA gene	Chr18:50365369-50366347 (-)
AKR/J	ENSMUSG00220021350	lncRNA gene	Chr18:50339527-50340505 (-)
BALB/cJ	ENSMUSG00180007859	lncRNA gene	Chr18:50925525-50926503 (-)
C3H/HeJ	ENSMUSG00175011331	lncRNA gene	Chr18:50534548-50535526 (-)
C57BL/6NJ	ENSMUSG00215009112	lncRNA gene	Chr18:49887424-49888402 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013803	lncRNA gene	Chr18:49748326-49749304 (-)
CBA/J	ENSMUSG00210022684	lncRNA gene	Chr18:50468252-50469230 (-)
DBA/2J	ENSMUSG00185028288	lncRNA gene	Chr18:50388259-50389237 (-)
FVB/NJ	ENSMUSG00205015752	lncRNA gene	Chr18:49830300-49831278 (-)
JF1/MsJ	ENSUMUG00000029803	lncRNA gene	Chr18:50294363-50295338 (-)
LP/J	ENSMUSG00230012444	lncRNA gene	Chr18:52378000-52378978 (-)
NOD/ShiLtJ	ENSMUSG00190029229	lncRNA gene	Chr18:50102875-50103853 (-)
NZO/HlLtJ	ENSMUSG00225035755	lncRNA gene	Chr18:52291812-52292790 (-)
PWK/PhJ	ENSLUMG00010021996	lncRNA gene	Chr18:50462065-50463040 (-)
SPRET/EiJ	ENSMSPG00010013299	lncRNA gene	Chr18:50790174-50791152 (-)
WSB/EiJ	ENSIUOG00005009695	lncRNA gene	Chr18:49994138-49995116 (-)

Homology

• Gene Tree
  Gm56491
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120074 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120074	Ensembl Gene Model | MGI Sequence Detail	4009	C57BL/6J
transcript	ENSMUST00000374698	Ensembl | MGI Sequence Detail	520	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56491:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153325	Chr18:53166685-53166717 (-)	3,045 bp