Gm56489 Gene Detail

Summary

• Symbol
  Gm56489
• Name
  predicted gene, 56489

• Feature Type
  lncRNA gene
• IDs
  MGI:7336892
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:32200155-32201397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336892	lncRNA gene	Chr18:32200155-32201397 (-)
129S1/SvImJ	ENSMUSG00200016277	lncRNA gene	Chr18:29188132-29189036 (-)
A/J	ENSMUSG00195002418	lncRNA gene	Chr18:29379577-29380480 (-)
AKR/J	ENSMUSG00220011643	lncRNA gene	Chr18:29347516-29348420 (-)
BALB/cJ	ENSMUSG00180003501	lncRNA gene	Chr18:29854969-29855873 (-)
C3H/HeJ	ENSMUSG00175023983	lncRNA gene	Chr18:29370283-29371187 (-)
C57BL/6NJ	ENSMUSG00215022113	lncRNA gene	Chr18:29070892-29071796 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016181	lncRNA gene	Chr18:29000106-29001014 (-)
CBA/J	ENSMUSG00210016309	lncRNA gene	Chr18:29378501-29379404 (-)
DBA/2J	ENSMUSG00185023079	lncRNA gene	Chr18:29313092-29313995 (-)
FVB/NJ	ENSMUSG00205022781	lncRNA gene	Chr18:29057030-29057934 (-)
JF1/MsJ	ENSUMUG00000026578	lncRNA gene	Chr18:29440355-29441264 (-)
LP/J	ENSMUSG00230049097	lncRNA gene	Chr18:31385722-31386626 (-)
NOD/ShiLtJ	ENSMUSG00190007148	lncRNA gene	Chr18:29107096-29107999 (-)
NZO/HlLtJ	ENSMUSG00225047811	lncRNA gene	Chr18:31310632-31311535 (-)
PWK/PhJ	ENSLUMG00010003540	lncRNA gene	Chr18:29591802-29592710 (-)
SPRET/EiJ	ENSMSPG00010022457	lncRNA gene	Chr18:29616746-29617660 (-)
WSB/EiJ	ENSIUOG00005002750	lncRNA gene	Chr18:29118495-29119399 (-)

Homology

• Gene Tree
  Gm56489
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120022 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120022	Ensembl Gene Model | MGI Sequence Detail	1243	C57BL/6J
transcript	ENSMUST00000241062	Ensembl | MGI Sequence Detail	1243	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56489:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152727	Chr18:32201211-32201248 (-)	167 bp