Gm56476 Gene Detail

Summary

• Symbol
  Gm56476
• Name
  predicted gene, 56476

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6849410
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:45003325-45003427 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849410	unclassified non-coding RNA gene	Chr2:45003325-45003427 (+)
129S1/SvImJ	ENSMUSG00200011304	unclassified non-coding RNA gene	Chr2:42019207-42019308 (+)
A/J	ENSMUSG00195010209	unclassified non-coding RNA gene	Chr2:42111874-42111978 (+)
AKR/J	ENSMUSG00220020777	unclassified non-coding RNA gene	Chr2:42259464-42259568 (+)
BALB/cJ	ENSMUSG00180021796	unclassified non-coding RNA gene	Chr2:42117822-42117928 (+)
C3H/HeJ	ENSMUSG00175014302	unclassified non-coding RNA gene	Chr2:42106087-42106193 (+)
C57BL/6NJ	ENSMUSG00215014893	unclassified non-coding RNA gene	Chr2:42157694-42157798 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001653	unclassified non-coding RNA gene	Chr2:41763295-41763401 (+)
CBA/J	ENSMUSG00210001111	unclassified non-coding RNA gene	Chr2:42160038-42160142 (+)
DBA/2J	ENSMUSG00185002633	unclassified non-coding RNA gene	Chr2:42020109-42020212 (+)
FVB/NJ	ENSMUSG00205001889	unclassified non-coding RNA gene	Chr2:41796522-41796626 (+)
JF1/MsJ	ENSUMUG00000000574	unclassified non-coding RNA gene	Chr2:41841502-41841604 (+)
LP/J	ENSMUSG00230000754	unclassified non-coding RNA gene	Chr2:43940420-43940523 (+)
NOD/ShiLtJ	ENSMUSG00190002312	unclassified non-coding RNA gene	Chr2:41998709-41998822 (+)
NZO/HlLtJ	ENSMUSG00225000951	unclassified non-coding RNA gene	Chr2:51651369-51651467 (+)
PWK/PhJ	ENSLUMG00010004672	unclassified non-coding RNA gene	Chr2:42022482-42022582 (+)
SPRET/EiJ	ENSMSPG00010011096	unclassified non-coding RNA gene	Chr2:42888534-42888634 (+)
WSB/EiJ	ENSIUOG00005001253	unclassified non-coding RNA gene	Chr2:42016872-42016980 (+)

Homology

• Gene Tree
  Gm56476
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076472 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076472	Ensembl Gene Model | MGI Sequence Detail	103	C57BL/6J
transcript	ENSMUST00020183414	Ensembl | MGI Sequence Detail	103	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56476:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17633	Chr2:45002248-45002267 (+)	-1,067 bp
Tssr17634	Chr2:45002281-45002292 (+)	-1,038 bp
Tssr17635	Chr2:45002302-45002316 (+)	-1,016 bp