Gm56421 Gene Detail

Summary

• Symbol
  Gm56421
• Name
  predicted gene, 56421

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6849300
• Alliance
  genome feature page
• Transcription Start Sites
  13 TSS

Location &
Maps

• Sequence Map
  Chr7:142131586-142131655 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849300	unclassified non-coding RNA gene	Chr7:142131586-142131655 (+)
129S1/SvImJ	ENSMUSG00200046770	unclassified non-coding RNA gene	Chr7:128697963-128698032 (+)
A/J	ENSMUSG00195041324	unclassified non-coding RNA gene	Chr7:133180016-133180085 (+)
AKR/J	ENSMUSG00220037993	unclassified non-coding RNA gene	Chr7:126662243-126662312 (+)
BALB/cJ	ENSMUSG00180042350	unclassified non-coding RNA gene	Chr7:129871415-129871484 (+)
C3H/HeJ	ENSMUSG00175043214	unclassified non-coding RNA gene	Chr7:130600948-130601017 (+)
C57BL/6NJ	ENSMUSG00215048103	unclassified non-coding RNA gene	Chr7:129867288-129867357 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051057	unclassified non-coding RNA gene	Chr7:133169516-133169585 (+)
CBA/J	ENSMUSG00210032706	unclassified non-coding RNA gene	Chr7:130358868-130358937 (+)
DBA/2J	ENSMUSG00185018650	unclassified non-coding RNA gene	Chr7:134637447-134637516 (+)
FVB/NJ	ENSMUSG00205047234	unclassified non-coding RNA gene	Chr7:130279572-130279641 (+)
JF1/MsJ	ENSUMUG00000050486	unclassified non-coding RNA gene	Chr7:139712879-139712948 (+)
LP/J	ENSMUSG00230043286	unclassified non-coding RNA gene	Chr7:140800783-140800852 (+)
NOD/ShiLtJ	ENSMUSG00190030839	unclassified non-coding RNA gene	Chr7:130466345-130466414 (+)
NZO/HlLtJ	ENSMUSG00225053120	unclassified non-coding RNA gene	Chr7:139009707-139009776 (+)
PWK/PhJ	ENSLUMG00010048383	unclassified non-coding RNA gene	Chr7:128841274-128841343 (+)
SPRET/EiJ	ENSMSPG00010044586	unclassified non-coding RNA gene	Chr7:130307230-130307299 (+)
WSB/EiJ	ENSIUOG00005037774	unclassified non-coding RNA gene	Chr7:131229623-131229692 (+)

Homology

• Gene Tree
  Gm56421
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075214 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075214	Ensembl Gene Model | MGI Sequence Detail	70	C57BL/6J
transcript	ENSMUST00020182797	Ensembl | MGI Sequence Detail	70	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70215	Chr7:142130685-142130713 (+)	-887 bp
Tssr70216	Chr7:142130722-142130777 (+)	-836 bp
Tssr70217	Chr7:142130779-142130794 (+)	-799 bp
Tssr2460	Chr7:142130980-142130997 (+)	-597 bp
Tssr70218	Chr7:142131110-142131144 (+)	-459 bp
Tssr70219	Chr7:142131149-142131182 (+)	-420 bp
Tssr70220	Chr7:142131242-142131294 (+)	-318 bp
Tssr70221	Chr7:142131323-142131333 (+)	-258 bp
Tssr70222	Chr7:142131338-142131391 (+)	-221 bp
Tssr70223	Chr7:142131510-142131533 (+)	-64 bp
Tssr70224	Chr7:142131567-142131578 (+)	-13 bp
Tssr70225	Chr7:142131605-142131616 (+)	25 bp
Tssr2461	Chr7:142131648-142131663 (+)	70 bp