Gm56420 Gene Detail

Summary

• Symbol
  Gm56420
• Name
  predicted gene, 56420

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6849298
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:142130590-142130660 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849298	unclassified non-coding RNA gene	Chr7:142130590-142130660 (+)
129S1/SvImJ	ENSMUSG00200047877	unclassified non-coding RNA gene	Chr7:128696967-128697037 (+)
A/J	ENSMUSG00195041288	unclassified non-coding RNA gene	Chr7:133179020-133179090 (+)
AKR/J	ENSMUSG00220036972	unclassified non-coding RNA gene	Chr7:126661247-126661317 (+)
BALB/cJ	ENSMUSG00180041596	unclassified non-coding RNA gene	Chr7:129870419-129870489 (+)
C3H/HeJ	ENSMUSG00175046317	unclassified non-coding RNA gene	Chr7:130599952-130600022 (+)
C57BL/6NJ	ENSMUSG00215047449	unclassified non-coding RNA gene	Chr7:129866292-129866362 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051233	unclassified non-coding RNA gene	Chr7:133168520-133168590 (+)
CBA/J	ENSMUSG00210031475	unclassified non-coding RNA gene	Chr7:130357872-130357942 (+)
DBA/2J	ENSMUSG00185018756	unclassified non-coding RNA gene	Chr7:134636451-134636521 (+)
FVB/NJ	ENSMUSG00205047831	unclassified non-coding RNA gene	Chr7:130278576-130278646 (+)
JF1/MsJ	ENSUMUG00000049079	unclassified non-coding RNA gene	Chr7:139711883-139711953 (+)
LP/J	ENSMUSG00230043164	unclassified non-coding RNA gene	Chr7:140799787-140799857 (+)
NOD/ShiLtJ	ENSMUSG00190030713	unclassified non-coding RNA gene	Chr7:130465349-130465419 (+)
NZO/HlLtJ	ENSMUSG00225052899	unclassified non-coding RNA gene	Chr7:139008711-139008781 (+)
PWK/PhJ	ENSLUMG00010048817	unclassified non-coding RNA gene	Chr7:128840277-128840347 (+)
SPRET/EiJ	ENSMSPG00010044778	unclassified non-coding RNA gene	Chr7:130306234-130306304 (+)
WSB/EiJ	ENSIUOG00005037985	unclassified non-coding RNA gene	Chr7:131228627-131228697 (+)

Homology

• Gene Tree
  Gm56420
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076121 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076121	Ensembl Gene Model | MGI Sequence Detail	71	C57BL/6J
transcript	ENSMUST00020183289	Ensembl | MGI Sequence Detail	71	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70212	Chr7:142129267-142129271 (+)	-1,321 bp
Tssr70213	Chr7:142129726-142129808 (+)	-823 bp
Tssr70214	Chr7:142130348-142130390 (+)	-221 bp