Gm56342 Gene Detail

Summary

• Symbol
  Gm56342
• Name
  predicted gene, 56342

• Feature Type
  rRNA gene
• IDs
  MGI:6849142
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:81373579-81373686 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849142	rRNA gene	Chr2:81373579-81373686 (-)
129S1/SvImJ	ENSMUSG00200004618	rRNA gene	Chr2:78424603-78424710 (-)
A/J	ENSMUSG00195020375	rRNA gene	Chr2:78591005-78591112 (-)
AKR/J	ENSMUSG00220002514	rRNA gene	Chr2:78479435-78479542 (-)
BALB/cJ	ENSMUSG00180006995	rRNA gene	Chr2:78519047-78519154 (-)
C3H/HeJ	ENSMUSG00175011498	rRNA gene	Chr2:78646652-78646759 (-)
C57BL/6NJ	ENSMUSG00215028851	rRNA gene	Chr2:78496417-78496524 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032632	rRNA gene	Chr2:77985038-77985145 (-)
CBA/J	ENSMUSG00210002540	rRNA gene	Chr2:78680798-78680905 (-)
DBA/2J	ENSMUSG00185011889	rRNA gene	Chr2:78515294-78515401 (-)
FVB/NJ	ENSMUSG00205021103	rRNA gene	Chr2:77855452-77855559 (-)
JF1/MsJ	ENSUMUG00000045515	rRNA gene	Chr2:78220444-78220551 (-)
LP/J	ENSMUSG00230026453	rRNA gene	Chr2:80320842-80320949 (-)
NOD/ShiLtJ	ENSMUSG00190011187	rRNA gene	Chr2:78592357-78592464 (-)
NZO/HlLtJ	ENSMUSG00225003281	rRNA gene	Chr2:88087916-88088023 (-)
PWK/PhJ	ENSLUMG00010035235	rRNA gene	Chr2:78391712-78391819 (-)
SPRET/EiJ	ENSMSPG00010022116	rRNA gene	Chr2:79723608-79723715 (-)
WSB/EiJ	ENSIUOG00005011884	rRNA gene	Chr2:77358526-77358633 (+)

Homology

• Gene Tree
  Gm56342
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075074 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075074	Ensembl Gene Model | MGI Sequence Detail	108	C57BL/6J
transcript	ENSMUST00020182910	Ensembl | MGI Sequence Detail	108	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;