Gm56339 Gene Detail

Summary

• Symbol
  Gm56339
• Name
  predicted gene, 56339

• Feature Type
  miRNA gene
• IDs
  MGI:6849136
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:24826843-24826968 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849136	miRNA gene	Chr2:24826843-24826968 (+)
129S1/SvImJ	ENSMUSG00200053228	miRNA gene	Chr2:21810972-21811097 (+)
A/J	ENSMUSG00195050990	miRNA gene	Chr2:21901760-21901885 (+)
AKR/J	ENSMUSG00220053737	miRNA gene	Chr2:22019548-22019673 (+)
BALB/cJ	ENSMUSG00180054480	miRNA gene	Chr2:21912600-21912725 (+)
C3H/HeJ	ENSMUSG00175054005	miRNA gene	Chr2:21876812-21876937 (+)
C57BL/6NJ	ENSMUSG00215050305	miRNA gene	Chr2:21935471-21935596 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053493	miRNA gene	Chr2:21653514-21653639 (+)
CBA/J	ENSMUSG00210018084	miRNA gene	Chr2:21915780-21915905 (+)
DBA/2J	ENSMUSG00185053268	miRNA gene	Chr2:21816051-21816176 (+)
FVB/NJ	ENSMUSG00205051214	miRNA gene	Chr2:21669177-21669302 (+)
JF1/MsJ	ENSUMUG00000056365	miRNA gene	Chr2:21727773-21728342 (+)
LP/J	ENSMUSG00230046257	miRNA gene	Chr2:23746997-23747122 (+)
NOD/ShiLtJ	ENSMUSG00190052799	miRNA gene	Chr2:21907288-21907413 (+)
NZO/HlLtJ	ENSMUSG00225011426	miRNA gene	Chr2:31497654-31497779 (+)
PWK/PhJ	ENSLUMG00010052947	miRNA gene	Chr2:21823758-21823883 (+)
SPRET/EiJ	ENSMSPG00010046365	miRNA gene	Chr2:22512464-22512588 (+)
WSB/EiJ	ENSIUOG00005052604	miRNA gene	Chr2:21772300-21772425 (+)

Homology

• Gene Tree
  Gm56339
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075034 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075034	Ensembl Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	ENSMUST00020181858	Ensembl | MGI Sequence Detail	126	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56339:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16632	Chr2:24824860-24824893 (+)	-1,966 bp