Gm56282 Gene Detail

Summary

• Symbol
  Gm56282
• Name
  predicted gene, 56282

• Feature Type
  snRNA gene
• IDs
  MGI:6849022
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:100665150-100665309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849022	snRNA gene	Chr5:100665150-100665309 (-)
129S1/SvImJ	ENSMUSG00200006808	snRNA gene	Chr5:94407039-94407198 (-)
A/J	ENSMUSG00195036362	snRNA gene	Chr5:93973041-93973200 (-)
AKR/J	ENSMUSG00220038322	snRNA gene	Chr5:93442537-93442696 (-)
BALB/cJ	ENSMUSG00180036554	snRNA gene	Chr5:94129189-94129348 (-)
C3H/HeJ	ENSMUSG00175034606	snRNA gene	Chr5:96233772-96233931 (-)
C57BL/6NJ	ENSMUSG00215025191	snRNA gene	Chr5:94050725-94050884 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210035548	snRNA gene	Chr5:94984117-94984276 (-)
DBA/2J	ENSMUSG00185038029	snRNA gene	Chr5:97902456-97902615 (-)
FVB/NJ	ENSMUSG00205044090	snRNA gene	Chr5:93879293-93879452 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230033249	snRNA gene	Chr5:101948682-101948841 (-)
NOD/ShiLtJ	ENSMUSG00190029644	snRNA gene	Chr5:93881235-93881394 (-)
NZO/HlLtJ	ENSMUSG00225013179	snRNA gene	Chr5:109718293-109718452 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026545	snRNA gene	Chr5:95878588-95878746 (-)
WSB/EiJ	ENSIUOG00005031655	snRNA gene	Chr5:96617309-96617468 (-)

Homology

• Gene Tree
  Gm56282
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00002076815 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076815	Ensembl Gene Model | MGI Sequence Detail	160	C57BL/6J
transcript	ENSMUST00020183669	Ensembl | MGI Sequence Detail	160	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9