Gm56249 Gene Detail

Summary

• Symbol
  Gm56249
• Name
  predicted gene, 56249

• Feature Type
  miRNA gene
• IDs
  MGI:6848956
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:100789518-100789626 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848956	miRNA gene	Chr1:100789518-100789626 (+)
129S1/SvImJ	ENSMUSG00200012998	miRNA gene	Chr4:26430836-26430941 (+)
129S1/SvImJ	ENSMUSG00200000230	miRNA gene	Chr1:97988180-97988288 (+)
129S1/SvImJ	ENSMUSG00200005924	miRNA gene	Chr6:45641604-45641710 (+)
A/J	ENSMUSG00195000314	miRNA gene	Chr1:97493734-97493842 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180005737	miRNA gene	Chr1:97801381-97801489 (+)
BALB/cJ	ENSMUSG00180027657	miRNA gene	Chr6:45726657-45726763 (+)
C3H/HeJ	ENSMUSG00175005587	miRNA gene	Chr1:97705844-97705952 (+)
C3H/HeJ	ENSMUSG00175018720	miRNA gene	Chr6:45488259-45488365 (+)
C57BL/6NJ	ENSMUSG00215012180	miRNA gene	Chr6:45686655-45686761 (+)
C57BL/6NJ	ENSMUSG00215001015	miRNA gene	Chr4:26506298-26506403 (+)
C57BL/6NJ	ENSMUSG00215000388	miRNA gene	Chr1:97719805-97719913 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210000073	miRNA gene	Chr1:97565566-97565674 (+)
CBA/J	ENSMUSG00210018877	miRNA gene	Chr6:45533112-45533218 (+)
DBA/2J	ENSMUSG00185008467	miRNA gene	Chr1:102034532-102034640 (+)
DBA/2J	ENSMUSG00185000474	miRNA gene	Chr4:26703287-26703392 (+)
DBA/2J	ENSMUSG00185014985	miRNA gene	Chr6:46114805-46114911 (+)
FVB/NJ	ENSMUSG00205000938	miRNA gene	Chr1:96913082-96913190 (+)
FVB/NJ	ENSMUSG00205036471	miRNA gene	Chr6:45779268-45779374 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230024532	miRNA gene	Chr1:101297650-101297758 (+)
LP/J	ENSMUSG00230021609	miRNA gene	Chr6:47138708-47138814 (+)
LP/J	ENSMUSG00230000710	miRNA gene	Chr4:30027498-30027603 (+)
NOD/ShiLtJ	ENSMUSG00190000634	miRNA gene	Chr1:97626306-97626414 (+)
NZO/HlLtJ	ENSMUSG00225000475	miRNA gene	Chr1:105192158-105192266 (+)
NZO/HlLtJ	ENSMUSG00225020988	miRNA gene	Chr6:49175266-49175372 (+)
NZO/HlLtJ	ENSMUSG00225009145	miRNA gene	Chr4:33938290-33938395 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005000304	miRNA gene	Chr1:97275579-97275687 (+)
WSB/EiJ	ENSIUOG00005030151	miRNA gene	Chr6:45749179-45749285 (+)

Homology

• Gene Tree
  Gm56249
  

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00002076597 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076597	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00020182441	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;