Gm56243 Gene Detail

Summary

• Symbol
  Gm56243
• Name
  predicted gene, 56243

• Feature Type
  miRNA gene
• IDs
  MGI:6848944
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:98477176-98477285 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848944	miRNA gene	Chr1:98477176-98477285 (+)
129S1/SvImJ	ENSMUSG00200000283	miRNA gene	Chr1:95666608-95666717 (+)
129S1/SvImJ	ENSMUSG00200006801	miRNA gene	Chr6:56234394-56234501 (-)
A/J	ENSMUSG00195000548	miRNA gene	Chr1:95188011-95188120 (+)
A/J	ENSMUSG00195035417	miRNA gene	Chr6:55933606-55933713 (-)
AKR/J	ENSMUSG00220000237	miRNA gene	Chr1:95492352-95492461 (+)
AKR/J	ENSMUSG00220006568	miRNA gene	Chr6:55402547-55402654 (-)
BALB/cJ	ENSMUSG00180010816	miRNA gene	Chr6:56290043-56290150 (-)
BALB/cJ	ENSMUSG00180005920	miRNA gene	Chr1:95495869-95495978 (+)
C3H/HeJ	ENSMUSG00175005649	miRNA gene	Chr1:95395924-95396033 (+)
C3H/HeJ	ENSMUSG00175042812	miRNA gene	Chr6:55975913-55976020 (-)
C57BL/6NJ	ENSMUSG00215000397	miRNA gene	Chr1:95384192-95384301 (+)
C57BL/6NJ	ENSMUSG00215031888	miRNA gene	Chr6:56269823-56269930 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032711	miRNA gene	Chr7:1486966-1487071 (-)
CAST/EiJ	ENSTCUG00005000143	miRNA gene	Chr1:94926765-94926874 (+)
CBA/J	ENSMUSG00210034982	miRNA gene	Chr6:56088569-56088676 (-)
CBA/J	ENSMUSG00210000186	miRNA gene	Chr1:95245873-95245982 (+)
DBA/2J	ENSMUSG00185014461	miRNA gene	Chr1:99713662-99713771 (+)
DBA/2J	ENSMUSG00185020641	miRNA gene	Chr6:56670915-56671022 (-)
FVB/NJ	ENSMUSG00205000880	miRNA gene	Chr1:94583324-94583433 (+)
FVB/NJ	ENSMUSG00205033923	miRNA gene	Chr6:56155907-56156014 (-)
JF1/MsJ	ENSUMUG00000038972	miRNA gene	Chr6:56094508-56094617 (-)
JF1/MsJ	ENSUMUG00000025331	miRNA gene	Chr1:98445427-98445536 (+)
LP/J	ENSMUSG00230024449	miRNA gene	Chr1:98977215-98977324 (+)
LP/J	ENSMUSG00230014803	miRNA gene	Chr6:57791097-57791204 (-)
NOD/ShiLtJ	ENSMUSG00190000551	miRNA gene	Chr1:95302265-95302374 (+)
NOD/ShiLtJ	ENSMUSG00190009171	miRNA gene	Chr6:55932478-55932585 (-)
NZO/HlLtJ	ENSMUSG00225014071	miRNA gene	Chr6:59780423-59780530 (-)
NZO/HlLtJ	ENSMUSG00225000447	miRNA gene	Chr1:102888554-102888663 (+)
PWK/PhJ	ENSLUMG00010006637	miRNA gene	Chr1:94883998-94884107 (+)
SPRET/EiJ	ENSMSPG00010000929	miRNA gene	Chr1:96991433-96991542 (+)
WSB/EiJ	ENSIUOG00005000284	miRNA gene	Chr1:94994548-94994657 (+)

Homology

• Gene Tree
  Gm56243
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00002075992 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075992	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020183690	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;