Gm56239 Gene Detail

Summary

• Symbol
  Gm56239
• Name
  predicted gene, 56239

• Feature Type
  snoRNA gene
• IDs
  MGI:6848936
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:3424285-3424401 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848936	snoRNA gene	Chr11:3424285-3424401 (-)
129S1/SvImJ	ENSMUSG00200034417	snoRNA gene	Chr11:377452-377568 (-)
A/J	ENSMUSG00195024150	snoRNA gene	Chr11:284817-284933 (-)
AKR/J	ENSMUSG00220008899	snoRNA gene	Chr11:298019-298135 (-)
BALB/cJ	ENSMUSG00180027874	snoRNA gene	Chr11:307826-307942 (-)
C3H/HeJ	ENSMUSG00175010641	snoRNA gene	Chr11:297525-297641 (-)
C57BL/6NJ	ENSMUSG00215033726	snoRNA gene	Chr11:307848-307964 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040248	snoRNA gene	Chr11:398085-398201 (-)
CBA/J	ENSMUSG00210018481	snoRNA gene	Chr11:297163-297279 (-)
DBA/2J	ENSMUSG00185018712	snoRNA gene	Chr11:394879-394995 (-)
FVB/NJ	ENSMUSG00205036048	snoRNA gene	Chr11:268219-268335 (-)
JF1/MsJ	ENSUMUG00000046459	snoRNA gene	Chr11:550785-550901 (-)
LP/J	ENSMUSG00230036082	snoRNA gene	Chr11:1460655-1460771 (-)
NOD/ShiLtJ	ENSMUSG00190040690	snoRNA gene	Chr11:284726-284842 (-)
NZO/HlLtJ	ENSMUSG00225026345	snoRNA gene	Chr11:3517784-3517900 (-)
PWK/PhJ	ENSLUMG00010019279	snoRNA gene	Chr11:282335-282451 (-)
SPRET/EiJ	ENSMSPG00010008516	snoRNA gene	Chr11:370968-371084 (-)
WSB/EiJ	ENSIUOG00005007542	snoRNA gene	Chr11:298642-298758 (-)

Homology

• Gene Tree
  Gm56239
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075829 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075829	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020183553	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;