Gm56238 Gene Detail

Summary

• Symbol
  Gm56238
• Name
  predicted gene, 56238

• Feature Type
  snRNA gene
• IDs
  MGI:6848934
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:85384585-85384731 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848934	snRNA gene	Chr11:85384585-85384731 (+)
129S1/SvImJ	ENSMUSG00200020526	snRNA gene	Chr11:82538891-82539037 (+)
A/J	ENSMUSG00195009765	snRNA gene	Chr11:82393475-82393621 (+)
AKR/J	ENSMUSG00220012439	snRNA gene	Chr11:82587501-82587647 (+)
BALB/cJ	ENSMUSG00180011908	snRNA gene	Chr11:82575366-82575512 (+)
C3H/HeJ	ENSMUSG00175032622	snRNA gene	Chr11:82540283-82540429 (+)
C57BL/6NJ	ENSMUSG00215029815	snRNA gene	Chr11:82159024-82159170 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046476	snRNA gene	Chr11:82087384-82087530 (+)
CBA/J	ENSMUSG00210041528	snRNA gene	Chr11:82357883-82358029 (+)
DBA/2J	ENSMUSG00185020208	snRNA gene	Chr11:82668998-82669144 (+)
FVB/NJ	ENSMUSG00205023748	snRNA gene	Chr11:82463083-82463229 (+)
JF1/MsJ	ENSUMUG00000028939	snRNA gene	Chr11:82990692-82990838 (+)
LP/J	ENSMUSG00230029947	snRNA gene	Chr11:83707931-83708077 (+)
NOD/ShiLtJ	ENSMUSG00190020675	snRNA gene	Chr11:82675118-82675264 (+)
NZO/HlLtJ	ENSMUSG00225040125	snRNA gene	Chr11:85811723-85811869 (+)
PWK/PhJ	ENSLUMG00010034622	snRNA gene	Chr11:82489734-82489880 (+)
SPRET/EiJ	ENSMSPG00010028546	snRNA gene	Chr11:82954572-82954718 (+)
WSB/EiJ	ENSIUOG00005008596	snRNA gene	Chr11:82494996-82495142 (+)

Homology

• Gene Tree
  Gm56238
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076933 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076933	Ensembl Gene Model | MGI Sequence Detail	147	C57BL/6J
transcript	ENSMUST00020183614	Ensembl | MGI Sequence Detail	147	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56238:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103835	Chr11:85383546-85383558 (+)	-1,033 bp
Tssr103836	Chr11:85383563-85383577 (+)	-1,015 bp