Gm56171 Gene Detail

Summary

• Symbol
  Gm56171
• Name
  predicted gene, 56171

• Feature Type
  miRNA gene
• IDs
  MGI:6848800
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:167167938-167167993 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848800	miRNA gene	Chr1:167167938-167167993 (-)
129S1/SvImJ	ENSMUSG00200047372	miRNA gene	Chr1:164672071-164672126 (-)
A/J	ENSMUSG00195048734	miRNA gene	Chr1:163979707-163979762 (-)
AKR/J	ENSMUSG00220032141	miRNA gene	Chr1:163703271-163703326 (-)
BALB/cJ	ENSMUSG00180045591	miRNA gene	Chr1:164224991-164225046 (-)
C3H/HeJ	ENSMUSG00175047304	miRNA gene	Chr1:164328481-164328536 (-)
C57BL/6NJ	ENSMUSG00215044620	miRNA gene	Chr1:164106617-164106672 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020729	miRNA gene	Chr1:162683960-162684016 (-)
CBA/J	ENSMUSG00210041766	miRNA gene	Chr1:164192285-164192341 (-)
DBA/2J	ENSMUSG00185012399	miRNA gene	Chr1:168408614-168408670 (-)
FVB/NJ	ENSMUSG00205038906	miRNA gene	Chr1:163188740-163188796 (-)
JF1/MsJ	ENSUMUG00000013864	miRNA gene	Chr1:167561756-167561812 (-)
LP/J	ENSMUSG00230027235	miRNA gene	Chr1:168059896-168059951 (-)
NOD/ShiLtJ	ENSMUSG00190042603	miRNA gene	Chr1:163987635-163987690 (-)
NZO/HlLtJ	ENSMUSG00225005121	miRNA gene	Chr1:171645125-171645181 (-)
PWK/PhJ	ENSLUMG00010034291	miRNA gene	Chr1:162943960-162944016 (-)
SPRET/EiJ	ENSMSPG00010049491	miRNA gene	Chr1:166461501-166461557 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56171
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002075501 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075501	Ensembl Gene Model | MGI Sequence Detail	56	C57BL/6J
transcript	ENSMUST00020182864	Ensembl | MGI Sequence Detail	56	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56171:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14850	Chr1:167168084-167168115 (-)	-107 bp