Gm56138 Gene Detail

Summary

• Symbol
  Gm56138
• Name
  predicted gene, 56138

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6848734
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:20564615-20564703 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848734	unclassified non-coding RNA gene	Chr2:20564615-20564703 (+)
129S1/SvImJ	ENSMUSG00200042133	unclassified non-coding RNA gene	Chr2:17517195-17517283 (+)
A/J	ENSMUSG00195019030	unclassified non-coding RNA gene	Chr2:17655471-17655559 (+)
AKR/J	ENSMUSG00220014098	unclassified non-coding RNA gene	Chr2:17776463-17776551 (+)
BALB/cJ	ENSMUSG00180037662	unclassified non-coding RNA gene	Chr2:17640960-17641048 (+)
C3H/HeJ	ENSMUSG00175022822	unclassified non-coding RNA gene	Chr2:17600940-17601028 (+)
C57BL/6NJ	ENSMUSG00215033952	unclassified non-coding RNA gene	Chr2:17691237-17691325 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004528	unclassified non-coding RNA gene	Chr2:17434206-17434294 (+)
CBA/J	ENSMUSG00210004118	unclassified non-coding RNA gene	Chr2:17644363-17644451 (+)
DBA/2J	ENSMUSG00185039375	unclassified non-coding RNA gene	Chr2:17570012-17570100 (+)
FVB/NJ	ENSMUSG00205014987	unclassified non-coding RNA gene	Chr2:17575481-17575569 (+)
JF1/MsJ	ENSUMUG00000004781	unclassified non-coding RNA gene	Chr2:17481764-17481852 (+)
LP/J	ENSMUSG00230020402	unclassified non-coding RNA gene	Chr2:19476703-19476791 (+)
NOD/ShiLtJ	ENSMUSG00190014685	unclassified non-coding RNA gene	Chr2:17624513-17624601 (+)
NZO/HlLtJ	ENSMUSG00225001764	unclassified non-coding RNA gene	Chr2:27227254-27227342 (+)
PWK/PhJ	ENSLUMG00010035197	unclassified non-coding RNA gene	Chr2:17585404-17585492 (+)
SPRET/EiJ	ENSMSPG00010015503	unclassified non-coding RNA gene	Chr2:18120097-18120185 (+)
WSB/EiJ	ENSIUOG00005015708	unclassified non-coding RNA gene	Chr2:17679346-17679434 (+)

Homology

• Gene Tree
  Gm56138
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076489 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076489	Ensembl Gene Model | MGI Sequence Detail	89	C57BL/6J
transcript	ENSMUST00020182051	Ensembl | MGI Sequence Detail	89	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16439	Chr2:20564691-20564716 (+)	89 bp