Gm56125 Gene Detail

Summary

• Symbol
  Gm56125
• Name
  predicted gene, 56125

• Feature Type
  miRNA gene
• IDs
  MGI:6848709
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:45107513-45107621 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848709	miRNA gene	Chr7:45107513-45107621 (-)
129S1/SvImJ	ENSMUSG00200034441	miRNA gene	Chr7:32704135-32704243 (-)
A/J	ENSMUSG00195049084	miRNA gene	Chr7:36735094-36735202 (-)
AKR/J	ENSMUSG00220009028	miRNA gene	Chr7:31036737-31036845 (-)
BALB/cJ	ENSMUSG00180043998	miRNA gene	Chr7:33610515-33610623 (-)
C3H/HeJ	ENSMUSG00175040922	miRNA gene	Chr7:34140055-34140163 (-)
C57BL/6NJ	ENSMUSG00215047053	miRNA gene	Chr7:33400451-33400559 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047783	miRNA gene	Chr7:37123888-37123996 (-)
CBA/J	ENSMUSG00210049992	miRNA gene	Chr7:34511608-34511716 (-)
DBA/2J	ENSMUSG00185049630	miRNA gene	Chr7:38386862-38386970 (-)
FVB/NJ	ENSMUSG00205048485	miRNA gene	Chr7:34055977-34056085 (-)
JF1/MsJ	ENSUMUG00000053549	miRNA gene	Chr7:42867317-42867425 (-)
JF1/MsJ	ENSUMUG00000005331	miRNA gene	Chr2:15262062-15262170 (-)
LP/J	ENSMUSG00230051889	miRNA gene	Chr7:43813807-43813915 (-)
NOD/ShiLtJ	ENSMUSG00190050210	miRNA gene	Chr7:34383688-34383796 (-)
NZO/HlLtJ	ENSMUSG00225018987	miRNA gene	Chr7:42024508-42024616 (-)
PWK/PhJ	ENSLUMG00010048962	miRNA gene	Chr7:33345704-33345812 (-)
SPRET/EiJ	ENSMSPG00010040837	miRNA gene	Chr2:163556363-163556471 (+)
SPRET/EiJ	ENSMSPG00010044205	miRNA gene	Chr7:33115226-33115334 (-)
WSB/EiJ	ENSIUOG00005032508	miRNA gene	Chr7:34928872-34928980 (-)

Homology

• Gene Tree
  Gm56125
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00002076377 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076377	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00020182363	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56125:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72394	Chr7:45107949-45107983 (-)	-345 bp
Tssr72393	Chr7:45107816-45107837 (-)	-206 bp
Tssr72392	Chr7:45107768-45107772 (-)	-149 bp
Tssr72391	Chr7:45107641-45107648 (-)	-24 bp
Tssr72390	Chr7:45107607-45107626 (-)	4 bp